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GT11099

CSHL Arabidopsis genetrap mutant lines

Original: GT11099

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11099

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7122319 [Map]; Strand: w
      • AT4G11840.1 - [+] show detail - phospholipase D gamma 3
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: GT11099 - 5-prime edge 
    GCCTGTTCTA TCGACTTGAA CTGGATACTT AAGAAGATGA CCTGGCATCT 
    CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7128964 [Map]; Strand: w
      • AT4G11845.1 - [+] show detail - Interleukin-1 receptor-associated kinase 4 protein
        Distance: -861; Region: promoter
    Flanking Genome Sequence: GT11099 - 5-prime edge 
    TCTTATACCA ACCAAGGAGC AGCACAAGAC TGGAAATGAT TACCTTGGTG 
    ATTTAGTTTG CTCAAATCTT TTTTTTCAGA GATTGGATTC ACCATGACAA 
    GCTTTGTAAT GCATGATCTT ATGAATGATT TGGCATAAGC TCTTTCAGGA 
    TGACAACATT CCGGAGATAC CAAGCACAAC TCGACATTTT TCATTTTCTA 
    CAAGCCAATG TGATATTGTA ATCATATAGT ACTAAAGATA TGACAACATT 
    ACTAAATTAA ATCATATAGT AAAACTCCAA AACACACACT TTGATAGATC 
    AATTGTAATA AATAGATTTA CAGCTCATAA ATTTGAAAAG CACAACTAGA 
    CCCTAAAGGC ACACACTTTC ATTCAGATCA CACTCAGATA GATTTCTTGA 
    AGTGGAAGAA ATAAAGAACA AATGTTTATC ACTACAAGCC TACAAGGTCA 
    CTTTCAGATC GTGAGGTTTT CTTCTACTGC AAGGAACGAT CCTATGGTCT 
    TGCCACCGAG ATCTGGGAAT GTCTCCCATC CAGGAAGAGA ACTCACTTTG 
    CCTGTTCTAT CGACTTGAAC TGGATACTTA AGAAGATGAC CTGGCATCTC 
    TGTGACTTCC TCTGCTGCAT AC

AT4G11840.1

Model type
Protein coding
Short Description
phospholipase D gamma 3
Curator Summary
member of C2-PLD subfamily
Computational Description
phospholipase D gamma 3 (PLDGAMMA3); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D gamma 2 (TAIR:AT4G11830.2); Has 2125 Blast hits to 1669 proteins in 399 species: Archae - 2; Bacteria - 519; Metazoa - 437; Fungi - 453; Plants - 551; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G11845.1

Model type
Protein coding
Short Description
Interleukin-1 receptor-associated kinase 4 protein
Computational Description
Interleukin-1 receptor-associated kinase 4 protein; BEST Arabidopsis thaliana protein match is: Protein kinase protein with tetratricopeptide repeat domain (TAIR:AT3G54030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR