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GT11151

CSHL Arabidopsis genetrap mutant lines

Original: GT11151

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11151

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3089016 [Map]; Strand: w
      • AT3G10010.1 - [+] show detail - demeter-like 2
        Distance: -821; Region: promoter
    Flanking Genome Sequence: GT11151 - 3-prime edge 
    TAGTTACAAA TTATGATAAT TATATATTTA ATAAATTTCG TGTGTCACAT 
    TTCTTTTAAA CTACAATTAT GAATATCTAA AACTCATTCA TGCATATCTT 
    AAAATTTGAA TTCAAAACTT TCTTATCTTA TCTTTAGGTT CTTAATTAAC 
    AGTCACTAAA AATAGTCAAA GTTTTGAAGT TTATGAAAAA AGATAAGAGT 
    ATAATTAATG GATACGCCTC GTAACAAATT CTTGTAAAGT ATAGATAATA 
    TACATTTGTT AAATATGACA CGTGTTTATT TTTTTTTTAA ATATGATCAA 
    AATATATTTT AACTACCTAG ATGGTATGTA TGTCTCCAAT TTTGAATAAC 
    AAGTCAATTG TTATTAGAAA TGTCATAATA TAAAGAAGGG AATTAAATTT 
    GCAAAGAAAA AGTGAAAAAC AAAGGATTTG TATTTTGGAG AAAATTAAGG 
    ACTGGATTTG CAAAAACGAA AAAGTAACTT CATGTATATT GCCTTCCTTA 
    TAGCCTCTAT AAACTATTAT CTCAAATTTT GTCTGGACTC TGAAACTCAC 
    AAGACTTGAC TCTGGCTTAC TTGGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3089016 [Map]; Strand: w
      • AT3G10010.1 - [+] show detail - demeter-like 2
        Distance: -821; Region: promoter
    Flanking Genome Sequence: GT11151 - 3-prime edge 
    TAGTTACAAA TTATGATAAT TATATATTTA ATAAATTTCG TGTGTCACAT 
    TTCTTTTAAA CTACAATTAT GAATATCTAA AACTCATTCA TGCATATCTT 
    AAAATTTGAA TTCAAAACTT TCTTATCTTA TCTTTAGGTT CTTAATTAAC 
    AGTCACTAAA AATAGTCAAA GTTTTGAAGT TTATGAAAAA AGATAAGAGT 
    ATAATTAATG GATACGCCTC GTAACAAATT CTTGTAAAGT ATAGATAATA 
    TACATTTGTT AAATATGACA CGTGTTTATT TTTTTTTTAA ATATGATCAA 
    AATATATTTT AACTACCTAG ATGGTATGTA TGTCTCCAAT TTTGAATAAC 
    AAGTCAATTG TTATTAGAAA TGTCATAATA TAAAGAAGGG AATTAAATTT 
    GCAAAGAAAA AGTGAAAAAC AAAGGATTTG TATTTTGGAG AAAATTAAGG 
    ACTGGATTTG CAAAAACGAA AAAGTAACTT CATGTATATT GCCTTCCTTA 
    TAGCCTCTAT AAACTATTAT CTCAAATTTT GTCTGGACTC TGAAACTCAC 
    AAGACTTGAC TCTGGCTTAC TTGGC

AT3G10010.1

Model type
Protein coding
Short Description
demeter-like 2
Curator Summary
Encodes a protein with DNA glycosylase activity that is involved in maintaining methylation marks.
Computational Description
demeter-like 2 (DML2); FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 3292 Blast hits to 3211 proteins in 1332 species: Archae - 246; Bacteria - 2331; Metazoa - 80; Fungi - 82; Plants - 273; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).
Link
InterPro Scan - TAIR