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GT11245

CSHL Arabidopsis genetrap mutant lines

Original: GT11245

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11245

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981065 [Map]; Strand: w
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: -91; Region: promoter
    Flanking Genome Sequence: GT11245 - 3-prime edge 
    AGAAGAACCA TAGAGATCTC GAGCGTACAA AGAGAATCCT AGAGACTGTG 
    ATCGCGAAAG AGTTACCTAT ATAGAGAAGA GGAGATTCTG CGTGCATAGT 
    GGGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16001863 [Map]; Strand: w
      • AT4G33180.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT11245 - 5-prime edge 
    GGGGAGACAA AGATCAGATA TTTCCTGTGA AGATGGCTTA CGAATTAAAA 
    GAGTAAGTAA AAGTATATTT TTGTTCAAGT TAAATTGCTC CAACAAAATC 
    GAAGCATAAT ATTAAAATGC TAGCTTTAAT GGATGGTATA CTTGTGTAGG 
    ATTCTTGGAG ACAAAACGAA ACTAGAAATC ATTGACAACA CTTCACATGT 
    TCCTCAGATT GAATGTGCTC AAGAGTTCAA CAATATTGTT TTGAGATTTT 
    TGAAGGGTTC TTAAGAGCCG TAATTTTATT CCATGCTACA TGATTCTTCA 
    GTTTTTTTTA AGTGTTAAAC TATTGGTTAC GTAATTTTGC GACTTTACTT 
    GCCATGCTTT CTCATTTTTC ATGTAAGAAC TTTATCCATT ACTGTCATTG 
    TAGAGAACTC TATTTATAGC AAAAAGTAAT ACTAATATGC AACTTAATTT 
    TCGTGATACA TGAAAATAAT TAATATGCAG ATTTATGATA CAACTATTGG 
    TATGAGTTAG TTAGAATGGA GTTATGAATT GGGCCACCAA TACAATGACA 
    CAATTAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16002243 [Map]; Strand: w
      • AT4G33180.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: GT11245 - 5-prime edge 
    TTTATCCATT ACTGTCATTG TAGAGAACTC TATTTATAGC AAAAAGTAAT 
    ACTAATATGC AACTTAATTT TCGTGATACA TGAAAATAAT TAATATGCAG 
    ATTTATGATA CAACTATTGG TATGAGTTAG TTAGAATGGA GTTATGAATT 
    GGGCCACCAA TACAATGACA CAATTAAAGT GGTTCAACGT TGGTGGTTGC 
    GAAACTGCCA AACTAT

AT4G33180.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G21950.1); Has 8643 Blast hits to 8637 proteins in 1357 species: Archae - 85; Bacteria - 5901; Metazoa - 344; Fungi - 96; Plants - 652; Viruses - 2; Other Eukaryotes - 1563 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR