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GT11275

CSHL Arabidopsis genetrap mutant lines

Original: GT11275

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11275

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11876843 [Map]; Strand: w
      • AT1G32790.2 - [+] show detail - CTC-interacting domain 11
        Distance: 0; Region: exon1 (CDS)
      • AT1G32790.1 - [+] show detail - CTC-interacting domain 11
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT11275 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTAACG 
    GTGGTTTCTT CACCTCTGCT GGTTCCTTCT TCCGCAACAA TGGCTTTGCT 
    GGTACCGGAA ATGGCGGATA CGGTAACGAA AACGGTGGTT TCCGACGGGT 
    AAGAGACACT GGTTTTCGTC GATTGTCCTG TGCAAAGTTA TGATCTTTTG 
    TTGAATTGAG GTTTAACTTT ACTGAATTGT ATTAGGGTTT TTGTTAATTG 
    ATTGTGTTTT CACAAATTTT GTGTTGTTTT GTTTAGTCTA CGATTCATAG 
    CTTTGGATCA ATTGTGTTTC GTTTTCGTTG GAGATCTTTG AAAAGAAAGA 
    TTGTACATTT GAAAGCTTGA ATTTTACTTG ATGAGACTAC TTTATAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11876833 [Map]; Strand: w
      • AT1G32790.2 - [+] show detail - CTC-interacting domain 11
        Distance: 0; Region: exon1 (CDS)
      • AT1G32790.1 - [+] show detail - CTC-interacting domain 11
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT11275 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTAACG GTGGTTTCTT 
    CACCTCTGCT GGTTCCTTCT TCCGCAACAA TGGCTTTGCT GGTACCGGAA 
    ATGGCGGATA CGGTAACGAA AACGGTGGTT TCCGACGGGT AAGAGACACT 
    GGTTTTCGTC GATTGTCCTG TGCAAAGTTA TGATCTTTTG TTGAATTGAG 
    GTTTAACTTT ACTGAATTGT ATTAGGGTTT TTGTTAATTG ATTGTGTTTT 
    CACAAATTTT GTGTTGTTTT GTTTAGTCTA CGATTCATAG CTTTGGATCA 
    ATTGTGTTTC GTTTTCGTTG GAGATCTTTG AAAAGAAAGA TTGTACATTT 
    GAAAGCTTGA ATTTTACTTG ATGAGACTAC TTTAT

AT1G32790.1

Model type
Protein coding
Short Description
CTC-interacting domain 11
Curator Summary
RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.
Computational Description
CTC-interacting domain 11 (CID11); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 12 (TAIR:AT4G10610.1); Has 4154 Blast hits to 3448 proteins in 292 species: Archae - 0; Bacteria - 29; Metazoa - 2530; Fungi - 406; Plants - 814; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G32790.2

Model type
Protein coding
Short Description
CTC-interacting domain 11
Curator Summary
RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.
Computational Description
CTC-interacting domain 11 (CID11); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 12 (TAIR:AT4G10610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR