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GT11347

CSHL Arabidopsis genetrap mutant lines

Original: GT11347

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11347

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1719363 [Map]; Strand: c
      • AT3G05780.1 - [+] show detail - lon protease 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT11347 - 3-prime edge
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT AGTTAAGTCG 
    ATAGAGATAC AAAGGGAAAA CACAGTGCTT ACGTGCAGCT AGAGAGTACC
    GTAGTACGAA GGTAGACGAA GAGTCGTGTC AAAGCCACTC GTGTTAAACC
    CTTCCAAAAA TTAGTAAAAC TGATTAACTT AACAAAATTT GTAACATTAG
    TTTAGGTAAT TTTCTGGTCC ACTTCTCTGT TAAATCAGTG TTATAGTAAT
    ATAACTCTTA TTGATTGACA AAACTCGTAT ATTTACGTTT AGGCATCATG
    ATTACAATCA CAGAATAGGA TTAGCTAAAT ACCTTCGTTT ATCATCCTTA
    TTATAGTCGA CAAGTCTTAC GAACTACGAG ATTAGATTTC TTTCTTTCTG
    TCTTGTCCTT TTGAGATTCA TTCTACAGAC TTGTATTTAT ATGCAAAGAT
    ATTTTCTAAG AATTTCTTTA TTTTTATCCT ATTAATTATA AAACTGGAAA
    AATAAACAAT TTTTTTTTAT TATCCTTGTT AGCAATAATT AAGAAGATAA
    GGAAACTTTG AAGAAAATAA AGAATTTGGA CTTGTTTGTT TTGGATAATG
    GA

AT3G05780.1

Model type
Protein coding
Short Description
lon protease 3
Curator Summary
Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.
Computational Description
lon protease 3 (LON3); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 4 (TAIR:AT3G05790.1); Has 14658 Blast hits to 14489 proteins in 2407 species: Archae - 438; Bacteria - 7797; Metazoa - 399; Fungi - 597; Plants - 312; Viruses - 7; Other Eukaryotes - 5108 (source: NCBI BLink).
Link
InterPro Scan - TAIR