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GT11389

GT11389

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT11389

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 18630627 [Map]; Strand: w
- AT2G45190.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: 0; Region: exon1 (5UTR)

GTAGAGGATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGTCAAATA 
CCCATCAATC AATCAAATCC CCAAACACTC CCAAAAAAAG ATCAGCTTCC 
AATATTTTTC CCCTTCTTAC AAAAAAGATG TCTATGTCGT CTATGTCCTC 
CCCTTCCTCA GCTGTTTGTT CACCGGACCA CTTCTCTCCT TCCGACCATC 
TCTGCTATGT CCAATGCAAC TTTTGCCAAA CCATCCTTGC GGTACAAAAT 
AACCTCTCTT CAATACTTTC TCTCTCATTT TTTCTCCTCC AACTTCTCAT 
CTTCTTGATC TATACAAGAT TAGGGGTTTT TTAAATTCAT TGTTTCTTTT 
GTGTGCTTAT AGGTTAATGT TCCTTACACA AGCTTGTTCA AGACCGTAAC 
TGTCCGATGT GGTTGCTGTA CCAATCTCCT TTCGGTGAAC ATGAGATCAT 
ATGTCCTCCC AGCTTCTAAC CAGCTCCAGC TCCAGCTCGG TCCTCACTCT 
TACTTCAATC CCCAGGATAT TCTGGTACTT AAACAAAATT CAAATACATA 
ATCTTATAGG GTCTCATTTA GCTTATTGGA AGTAATCTCA AGCCTCAAGG 
ATATAAATAT TATTGTAGGA GGAGCTGAGA GATGCACCGT CTAACATGAA 
TATGATGATG ATGAATCAAC ATCCTACTAT GAATGACATA CCATCTTTCA 
TGGATCTTCA TCAACAACAT GAGATTCCTA AAG

3 prime edge [+] show sequence

Chromosome: 2; Position: 18630628 [Map]; Strand: w
- AT2G45190.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: 0; Region: exon1 (5UTR)

GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTCAAAT 
ACCCATCAAT CAATCAAATC CCCAAACACT CCCAAAAAAA GATCAGCTTC 
CAATATTTTT CCCCTTCTTA CAAAAAAGAT GTCTATGTCG TCTATGTCCT 
CCCCTTCCTC AGCTGTTTGT TCACCGGACC ACTTCTCTCC TTCCGACCAT 
CTCTGCTATG TCCAATGCAA CTTTTGCCAA ACCATCCTTG CGGTACAAAA 
TAACCTCTCT TCAATACTTT CTCTCTCATT TTTTCTCCTC CAACTTCTCA 
TCTTCTTGAT CTATACAAGA TTAGGGGTTT TTTAAATTCA TTGTTTCTTT 
TGTGTGCTTA TAGGTTAATG TTCCTTACAC AAGCTTGTTC AAGACCGTAA 
CTGTCCGATG TGGTTGCTGT ACCAATCTCC TTTCGGTGAA CATGAGATCA 
TATGTCCTCC CAGCTTCTAA CCAGCTCCAG CTCCAGCTCG GTCCTCACTC 
TTACTTCAAT CCCCAGGATA TTCTGGTACT TAAACAAAAT TCAAATACAT 
AATCTTATAG GGTCTCATTT AGCTTATTGG AAGTAATCTC AAGCCTCAAG 
GATATAAATA TTATTGTAGG AGGAGCTGAG AGATGCACCG TCTAACATGA 
ATATGATGAT GATGAATCAA CATCCTACTA TGAATGACAT ACCCATCTTT 
CATGGATCTT CATCAACAAC ATGAGATTCC TAAAG

3 prime edge [+] show sequence

Chromosome: 2; Position: 18630628 [Map]; Strand: w
- AT2G45190.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: 0; Region: exon1 (5UTR)

GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTCAAAT 
ACCCATCAAT CAATCAAATC CCCAAACACT CCCAAAAAAA GATCAGCTTC 
CAATATTTTT CCCCTTCTTA CAAAAAAGAT GTCTATGTCG TCTATGTCCT 
CCCCTTCCTC AGCTGTTTGT TCACCGGACC ACTTCTCTCC TTCCGACCAT 
CTCTGCTATG TCCAATGCAA CTTTTGCCAA ACCATCCTTG CGGTACAAAA 
TAACCTCTCT TCAATACTTT CTCTCTCATT TTTTCTCCTC CAACTTCTCA 
TCTTCTTGAT CTATACAAGA TTAGGGGTTT TTTAAATTCA TTGTTTCTTT 
TGTGTGCTTA TAGGTTAATG TTCCTTACAC AAGCTTGTTC AAGACCGTAA 
CTGTCCGATG TGGTTGCTGT ACCAATCTCC TTTCGGTGAA CATGAGATCA 
TATGTCCTCC CAGCTTCTAA CCAGCTCCAG CTCCAGCTCG GTCCTCACTC 
TTACTTCAAT CCCCAGGATA TTCTGGTACT TAAACAAAAT TCAAATACAT 
AATCTTATAG GGTCTCATTT AGCTTATTGG AAGTAATCTC AAGCCTCAAG 
GATATAAATA TTATTGTAGG AGGAGCTGAG AGATGCACCG TCTAACATGA 
ATATGATGAT GATGAATCAA CATCCTACTA TGAATGACAT ACCATCTTTC 
ATGGATCTTC ATCAACAACA TGAGATTCCT AAAGC

3 prime edge [+] show sequence

Chromosome: 2; Position: 18630530 [Map]; Strand: w
- AT2G45190.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: 0; Region: exon1 (CDS)

TCCAATATTT TTCCCCTTCT TACAAAAAAA ATGTCTATGT CGTCTATGTC 
CTCCCCTTCC TCAGTTGTTT GTTCACCGGA CCACTTCTCT CCTTCCGACC 
ATCTCTGCTA TGTCCAATGC AACTTTTGCC AAACCATCCT TGCGGTACAA 
AATAACCTCT CTTCAATACT TTCTCTCTCA TTTTTTCTCC TCCAACTTCT 
CATCTTCTTG ATCTATACAA GATTAGGGGT TTTTTAAATT CATTGTTTCT 
TTTGGGGGCT TATAGGTTAA TGTTCCTTAC ACAAGCTTGT TCAAGACCGT 
AACTGTCCGA TGTGGTTGCT GTACCAATCT CCTTTCGGTG AACATGAGAT 
CATATGTCCT CCCAGCTTCT AACCAGCTCC AGCTCCAGCT CGGTCCTCAC 
TCTTACTTCA ATCCCCAGGA TATTCTGGTA CTTAAACAAA ATTCAAATAC 
ATAATCTTAT AGGGTCTCAT TTAGCTTATT GGAAGTAATC TCAAGCCTCA 
AGGATATAAA TATTATTGTA GGAGGAGCTG AGAGATGCAC CGTCTAACAT 
GAATATGATG ATGATGAATC AACATCCTAC TATGAATGAC ATACCATCTT 
TCATGGATCT TCATCAACAA CATGAGATTC CTAAAG

5 prime edge [+] show sequence

Chromosome: 2; Position: 18630686 [Map]; Strand: w
- AT2G45190.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
  Distance: 0; Region: exon1 (5UTR)

CCTACTTTCT CCCTGTATTT GACTGATCAG AGGATTCTTG ATAAGGAGAA 
AAAAAAAACC CCACCATGAT CTGATCTTCT TGATTGTTGG GTTGCTGTGT 
ATTATATACC ACAAAGGAAG ATATATAGAG AGAGAAGAGG TGAAAGGAGT 
GAGAAGGGAA AGGGGATATT AATATATTAG AGGGTAAAAA TTAAACAACA 
AATGCTCTAA TTGTAGCCTC TAGGTCGTCT ACTATTAATT TCGTTAATTA 
ATTCGGTAAT ACTGTGTGTA TATATATAAT GTGGTGTATT ATACATTTCA 
ATTCAGCGAT ACATATAATC TTTAAAGAAA TTCTCCAATG GGTTATATAC 
AATTTTAGGT TTTGAATAGT ATAACAGAGT CAGCGGTAGT GAACCAGCAA 
CATAAATGGA ATAAGTTTGG ATGGTGTAGA ACAGATAACA CCAACCAAAT 
AAAAATAAAT ATGCCGGTGT TTAATAAGAC AATAACCATT TATAT

AT2G45190.1

Model type: Protein coding
Short Description: Plant-specific transcription factor YABBY family protein
Curator Summary: Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).
Computational Description: ABNORMAL FLORAL ORGANS (AFO); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT4G00180.1); Has 454 Blast hits to 452 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 436; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link: InterPro Scan - TAIR