GT114

CSHL Arabidopsis genetrap mutant lines

Original: GT114

Phenotypes

Morphological phenotypes

Original description

  • rootless
  • 1 shootless plant
Anatomical entity
/structure development stage
Phenotypes
root (PO:0009005)
  • present in fewer numbers in organism (PATO:0001997)
seedling (PO:0008037)
  • lethal (sensu genetics) (PATO:0000718)

Original: GT114

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15477015 [Map]; Strand: w
      • AT2G36870.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 32
        Distance: -2356; Region: intergenic
      • AT2G36880.1 - [+] show detail - methionine adenosyltransferase 3
        Distance: 2351; Region: intergenic
    Flanking Genome Sequence: GT114 - 5-prime edge
    TAGTTTTATA AACAAAATTA AATTGAGAAA ATGTCCCCGG AAGGACGATG 
    CTGAAATTGA ATAATATTGG AAATTAAAGT AGCAAATAGT ATAATAAATG
    AAATTGTATA AGCTTTCACT ATTTGTGTCG GTAACGGTGT GTTACGGTGA
    TCGAGTCTTG ATTATCGACG GTTGCGGGAC CCATCTGACC GACAAAAATA
    ATTCATTAAT CCATTAGCCA AAACCAACTT CATTATTTAT TTTTTGCTTC
    TTTAGTTTAT AATAGTTTCC AATATATATG AAGATTAGAT TATAAATAAT
    TATATTGTTT CCGTGCATTT ATCTCATTGC TTTTTGTTTT TTGTGTGGCG
    AAAAATAGTT TGTTTTGATG CATTTTCGTG ATTACAAAAA AAACGAATAA
    ATAGTGATTT GGTGAAAGCT TTTGTCTACC TATTGCGGAC TGAGTTGTTG
    GGTATATTAA TTTTTCAATT ACTTGTAGTA TAAGGATACA CATCGTGAAA
    TTTCACCGAC ATAAAAAAAA GAAAAATATT TCACTCAACC CTTTTCTCTT
    TTGACAAAAC TGATGGGAAC TGATTGATCT AACTGCTTTT AATGTTCTTG
    TTTAGTGATT ATGAATTCTC ATTGTATGAA AATGTGATCA TCCGACTAAA
    ACAATTAATA TAGTGGTTTG TGTAAGTAAT GCAATTGTA

AT2G36870.2

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 32
Computational Description
xyloglucan endotransglucosylase/hydrolase 32 (XTH32); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endo-transglycosylase-related 8 (TAIR:AT3G44990.1).
Link
InterPro Scan - TAIR

AT2G36880.1

Model type
Protein coding
Short Description
methionine adenosyltransferase 3
Computational Description
methionine adenosyltransferase 3 (MAT3); FUNCTIONS IN: copper ion binding, methionine adenosyltransferase activity; INVOLVED IN: one-carbon metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase family protein (TAIR:AT3G17390.1); Has 10904 Blast hits to 10897 proteins in 2898 species: Archae - 12; Bacteria - 5503; Metazoa - 373; Fungi - 167; Plants - 705; Viruses - 1; Other Eukaryotes - 4143 (source: NCBI BLink).
Link
InterPro Scan - TAIR