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GT11463

CSHL Arabidopsis genetrap mutant lines

Original: GT11463

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11463

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1056836 [Map]; Strand: w
      • AT4G02400.1 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: GT11463 - 5-prime edge 
    CATTTGATGT TGCCTTATTT GCGTCAGGCT CTTGGAAGAA GGTTTGCTTT 
    GACAATTTTC AAATCAGACT TGGTTTCCGT GTGATGTTTA TCTTTGATTA 
    ACTTGTTTTT CTATGTTGTG TAGATGAAAG GCTCCCAAAA TGCAGAATCC 
    AAAAAAGCTC CAAAGACTCG TGTACCAATC TCAAAGGGCC AAGATAAAAA 
    GGTTTCATTT CTTAAAACTT AACCTACCTT TTGTTTTATC CTTTTCCTCT 
    CCTCACTTCT TTGCATTGAA GGAATCGGGA GATGAAGAAA GTGAAGATTC 
    CGAGAGTGAA GCTGAGCAAA TGGTTGATGG GATTTTGACA TCTGCTTCGA 
    AGGAGACCTA TGAAATCCCT TCTCAAGCAG AGCTTATACA ACGTGCTTTT 
    GCTGGTGATG ACGTTGTAGA AGAATTTGAG AAGGATAAGC AAGAAGTTCT 
    AAATCAGGAA ATTCCTGAAC CGGAAAAGCC AGGTTCTAGT TCCTGG

AT4G02400.1

Model type
Protein coding
Short Description
U3 ribonucleoprotein (Utp) family protein
Computational Description
U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink).
Link
InterPro Scan - TAIR