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GT11545

CSHL Arabidopsis genetrap mutant lines

Original: GT11545

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11545

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 320761 [Map]; Strand: w
      • AT2G01720.1 - [+] show detail - Ribophorin I
        Distance: -497; Region: promoter
      • AT2G01730.1 - [+] show detail - cleavage and polyadenylation specificity factor 73 kDa subunit-II
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT11545 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACCATT 
    AATCGTCACT ACCACACAGC TCTTTCCAAT CTCTTGTCCA GCACCTGGAT 
    ACAACACAAA AAAGATAGAA TACTCTTATA CGGAAATTGA AATTGTGAAA 
    CTTTGAAGAA GCAAAGAGAG AAGAAGAAGA AGAACAACAA AAACTGTTAC 
    CAAGTACGAG ACAATCGATA GCCATAGTTA CTGAAGAAAT AAACAACAAT 
    TTGAGTTTCA AAACTCGTCG ATGGTCAAAA ATATCTTACT CGTTCGAATC 
    AGAACACAAA TTCAAGTGAC CGGAGAAAAT TTTGAAGGGG GCGAGAGAAG 
    AAACAGAGTT AGGTCGACAA ACGAATTTGA ATGGCGGCAA AGTGTTCAGT 
    GACATCGGAA CCGTTCGGAG TTATTACACG TGTCTGATCC AACCGTCGAT 
    ATTTTTGTGG TGTGAAGGCC AAT

AT2G01720.1

Model type
Protein coding
Short Description
Ribophorin I
Computational Description
Ribophorin I; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: Ribophorin I (TAIR:AT1G76400.1); Has 386 Blast hits to 386 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 127; Plants - 63; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01730.1

Model type
Protein coding
Short Description
cleavage and polyadenylation specificity factor 73 kDa subunit-II
Curator Summary
a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo
Computational Description
cleavage and polyadenylation specificity factor 73 kDa subunit-II (CPSF73-II); CONTAINS InterPro DOMAIN/s: RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-Casp domain (InterPro:IPR022712), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73-I (TAIR:AT1G61010.3); Has 5072 Blast hits to 5039 proteins in 1435 species: Archae - 491; Bacteria - 2753; Metazoa - 569; Fungi - 259; Plants - 193; Viruses - 0; Other Eukaryotes - 807 (source: NCBI BLink).
Link
InterPro Scan - TAIR