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GT11564

CSHL Arabidopsis genetrap mutant lines

Original: GT11564

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11564

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2923239 [Map]; Strand: c
      • AT3G09510.1 - [+] show detail - Ribonuclease H-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G09520.1 - [+] show detail - exocyst subunit exo70 family protein H4
        Distance: -504; Region: promoter
    Flanking Genome Sequence: GT11564 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TAAAACTGTA TATTCTTAAT TACTAAGATA TTTACGAGAA TTATAACATG 
    ATAACATAGA AATGATTTTG TGAATTTAGA TCTATTTGTT TATTATAATG 
    AAACAATTTT AACCGTGAAT ACGTAAATGA TTTTTTTCTT TCTTTATCGT 
    AAAGTTAATT TCTTATTTAC TTTCTAAAAA TAGTCGTAAA CTCGTGATAT 
    GAAACTATAA AAGGTAAACA AAGGTTACGT CATTTCAAAA AATCATGCAA 
    AGCCCACAAC ACGTGTGGGC CCAGAGTAAA ACATATTGGC AATATTCAAA 
    GGTCAACACC AACTTTCCTC CTCGCTTCCT CACCACAAAA TATAAGTTAA 
    CGACGTCGCT CTAACGCTGT GTAGTCTTAT AAATACCCCT TCAACGACTA 
    AATCTTCTCC CCTCATAAAC TCTCTCACAA CTTGCATTAT CGTTTCAAAA 
    ATTTCTCTCA ACGACGAAAA ACTGAGTCCT CTAGAAATTT CCACGACGAC 
    TTGATGATGA CGAGAAAAGC AATGATAAAC ATTTGTTGCG TGGCCACAAC 
    GCCGTCCAAG TATCCACCTC CTCCTCCTCT TACGTTAACC CCTCGCCAGA 
    GTTTGGAATC GGCGGCTATC TATGGAGTCA TTGAATCCGC GGCGGATATA 
    ATCGAGAGAT GGAACACTGA GACCAACACT TTCGCTAAAG TAACTTGTAT 
    GTTCTACGAG AACAAACCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3116585 [Map]; Strand: w
      • AT3G10110.1 - [+] show detail - Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 fam...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT11564 - 5-prime edge 
    TCCTACTTTC TAATAGTGAT ATGCTTCTGA GCTGGTTATT GAGTCACTTT 
    CAGATTGCAC TTAATAGTCG GATTTGGTTA GGTGAATTGA TGATGTGAAA 
    TCTCAAATCG AATCTATTTT CTATAAATAC TCTAAAAGGT GTAAAGCTAC 
    TAATATAAAT GCTCGCCGGT TGTAGAGTTG ATATGACAGT TAGACATGTG 
    AAGGATATTC AATTGATTTG GTCACATTCT CTGTGAATTG TGGTGTAGGA 
    GGAGGACTCG GGTTGATGAT GGGTTTGTTC TTGGGGGCAT TAGATAATCC 
    TATTACGCAT GATACTATGA CGGCTAGGCA GCAGTTTGTG TTCACGGCAA 
    AACAAATGGG GCAAAGGAGT TGGAATTCCT GTAAGACATT TGCAGTTATG 
    GGTTTGGTTT TCTCTGCTGC AGAATGCATT GTCGAAAAGG TAATACCTTG 
    TTTATTGACC AAGAAAAACA AGGAAATTCC ACTACTAACT CATGTATCAT 
    AACTTCAAAA CCTTATTATC GACTTTTTTG GTTTACCTCT CTGAAAAAGG 
    CAAGAGCTAA GCATGACACT GTAAACACCG CTATAGCTGG ATGTGTTACC 
    GGTGGTTCAA TGTCCGCCCG AGGTAAGACC TATTATCTTC TGTGCATGGA 
    ATTTAAATCT TAGAGATTCA TTATCAATAT GCAACGGCCT AATTCCCAAA 
    CTGTAATCTC GTAGAGGTTT GATTTCTCTT ACATGATACA TTGTGTTCTT

AT3G09510.1

Model type
Protein coding
Short Description
Ribonuclease H-like superfamily protein
Computational Description
Ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 1469 Blast hits to 1446 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1468; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09520.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H4
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H4 (EXO70H4); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: stem, sperm cell, stamen, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H3 (TAIR:AT3G09530.1); Has 837 Blast hits to 827 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 71; Plants - 622; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10110.1

Model type
Protein coding
Short Description
Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
Computational Description
maternal effect embryo arrest 67 (MEE67); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport, embryo development ending in seed dormancy; LOCATED IN: mitochondrial inner membrane, chloroplast, mitochondrial inner membrane presequence translocase complex; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT1G18320.1); Has 680 Blast hits to 680 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 229; Plants - 130; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR