GT116

CSHL Arabidopsis genetrap mutant lines

Original: GT116

Phenotypes

Morphological phenotypes

Original description

  • rootless
Anatomical entity
/structure development stage		 Phenotypes
root (PO:0009005)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT116

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1557304 [Map]; Strand: w
      • AT4G03505.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TA...
        Distance: 0; Region: exon1 (CDS)
      • AT4G03510.1 - [+] show detail - RING membrane-anchor 1
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT116 - 5-prime edge 
    CTATCAAGAC CTGCTTCAGA ACTGTCCATC CTCAATCCTG AAATCATCAG 
    ACAAACACAG TTTTAAGTTC CCTAACCAAA TGTCAACGAT ACCAAGAAGA 
    GGAAGGAGAG ACTTACGAAA TGTAAAGGAG ATCAGAAGTA CAAGAGGAGT 
    TCCTGAAGTC TGATGGAAGA GAGAGACTAT ATTTTCGTCC ATTTATAAAA 
    CTCCATCTGT GTCTCAAAGC TCAGAGTAAG TTTAATCAAA GTCAATGCAG 
    AAACAGAGGT ATGGTCATTT TTTAATCCGA AATAAACCTA ACACCTCGAT 
    TACAGAGTTG TAGTCTTTAC TCTTTCGAGT GATTGGGGTA ATCTAAAGTC 
    AACTTTATAA AATAAAATAA AAAAAACTAC GTAAATTTAC ATACCCCAAT 
    ATAATGCATT TGAAAAGCTT AATTTTGATA GTTCTACCCA TGGGCTGAAT 
    TATACAAGCA CATGCGGATC AGGCCTATTA GGTTGGCCTT TTCTGTAGAC 
    AACACTATCC TCCAGATCAA AT

AT4G03505.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03510.1

Model type
Protein coding
Short Description
RING membrane-anchor 1
Curator Summary
RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity.
Computational Description
RING membrane-anchor 1 (RMA1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 2 (TAIR:AT4G28270.1); Has 3991 Blast hits to 3981 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 2157; Fungi - 553; Plants - 874; Viruses - 19; Other Eukaryotes - 388 (source: NCBI BLink).
Link
InterPro Scan - TAIR