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GT11807

CSHL Arabidopsis genetrap mutant lines

Original: GT11807

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11807

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3026237 [Map]; Strand: w
      • AT3G09850.1 - [+] show detail - D111/G-patch domain-containing protein
        Distance: -386; Region: promoter
      • AT3G09860.1 - [+] show detail - unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT11807 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTAGG ATTAACCCAG GTAAGAACGG 
    AGAAAGCAGC AGAACCAATC CATATATTCA CGAAACGATC TGCATCTGCA 
    TGTGGCACTC CTGGATCTCC CCTGTACGCA TTTCCAAAGT ACTTCTCCAT 
    TTTCACTCTC TCTCTCGTCA CTCTCTGTGT TTATCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3026315 [Map]; Strand: w
      • AT3G09850.1 - [+] show detail - D111/G-patch domain-containing protein
        Distance: -464; Region: promoter
      • AT3G09860.1 - [+] show detail - unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; ...
        Distance: 0; Region: intron1 (CDS)
      • AT3G09863.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -977; Region: promoter
    Flanking Genome Sequence: GT11807 - 5-prime edge 
    TTTATCCCTG GGTAATCCTT AATGTGGCAG CTCTCTAACC AGTTCAAGTA 
    TTTCTCGCTC TCTCTCTCTC TTGAACTTTC GAATTCGAAT TTGGGTACTT 
    TCGGTTTTTC GTGGTTGATT TCCGAATTGG GTTTCTTGGT CATGGGTTTT 
    TGGTCATTCT CACTCGACCA CCGGGGAGAA TTATGTTTTG ATTCTTTTGG 
    TTTGACTGGT AAAGTTCTTC TTTTTCTGCT ACATTAGATT GGTTATAGCG 
    CAATGTTTGA AGATTTAGTA ATGGCAGAAG ATACTTTGAT GTCTTTAGGC 
    GAATTGAATG AAGTTGTTAT CATAGGCATT GCTAAAACCT CAGGGTTCAA 
    TATCATCTAA TAGTTGATGG AGTGGTTAGT CCTATGATAC ATAGTGGGAT 
    CAACTGGGTT TAAGGGCTTG GAGATCAAAT AATCATGGTT CTCCCGGATA 
    AGTTCTGGGG CTTATCCAAA GTATGGTTTT TGTATGGGTG GCTCTCATAC 
    TCTCTAATGG GGCAGTTACC ATGACAAGTG GATGCTGTTT GAGCAGTACC 
    ACTGGAAAAA AGCAAGGGCA AAG

AT3G09850.1

Model type
Protein coding
Short Description
D111/G-patch domain-containing protein
Computational Description
D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT1G17070.1); Has 4043 Blast hits to 2784 proteins in 353 species: Archae - 19; Bacteria - 864; Metazoa - 1783; Fungi - 478; Plants - 347; Viruses - 9; Other Eukaryotes - 543 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09860.1

Model type
Protein coding
Computational Description
unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09863.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR