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GT11877

CSHL Arabidopsis genetrap mutant lines

Original: GT11877

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT11877

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14203338 [Map]; Strand: w
    Flanking Genome Sequence: GT11877 - 3-prime edge 
    ATTCTACCCG CCGCTCGGTG GTAATTATAA TTCGAGGGGG GCCGAACGAC 
    GCTTCCGCCG AACGGACTTA GCCAACGACA CGTGCCTTTG GGAGCCTAAG 
    CTCCTACTGA GGGTCAGCAA TCGGGGGGCG GGCGCATGCG TCGCTTCTAG 
    CCCGGATTCT GACTTAGAGG CGTTCAGACA TAATCCAGCG CACGGTAGCT 
    TCGCGCCACT GGCTTTTCAA CCAAGCGCGA TGACCAATTG TGCGAATCAA 
    CGGTTCCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 65530 [Map]; Strand: w
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 51; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 3743; Region: intergenic
    Flanking Genome Sequence: GT11877 - 5-prime edge 
    CTCACCATTT TTAAGGTTTA ATGTTGCTTT TATCAAACTT AAGAACTTGA 
    ATTAAGTTTT GTCTCCTCCA ATGGGGGGGT TCTCTTCGAG AAAAAAATAA 
    ATTTTGGAAA ACAATACATA TATGGTTTTG TTTACAATAT ATGCTTGCTT 
    TTACTGG

AT3G41979.1

Model type
Ribosomal RNA
Short Description
rRNA
Computational Description
5SrRNA
Link
InterPro Scan - TAIR

AT3G42047.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00165.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR