GT121

CSHL Arabidopsis genetrap mutant lines

Original: GT121

Phenotypes

Morphological phenotypes

Original description

  • glossy leaves
Anatomical entity
/structure development stage		 Phenotypes
vascular leaf (PO:0009025)
  • high saturation (PATO:0001229)

Original: GT121

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1528775 [Map]; Strand: c
      • AT4G03445.1 - [+] show detail - MIR447A; miRNA
        Distance: -405; Region: promoter
    Flanking Genome Sequence: GT121 - 3-prime edge 
    CCGTTACCGA CCGTTCTCAT CCCTGATAGT ATCCAATTCA ACATCTCCAT 
    GCTTCGCTCG AAAATTCCAT AACCCTAAAC ATTAAAAGTC TTCGAAAATA 
    TAGGACGCTA TTAATAGGCT GATAGCATTA GAGTGATGCA TTCAACAGTA 
    TCTAATCTGT CCCCAATCCT CCAAATCTGC GTTTTTCTCC TCCCTTTTCG 
    CTTCGATTTC TGATTTTGAT TATTTGTCCA TTCCGTGATT CCATAAAGAG 
    AGCAGTTCCA TCGAGGTTTC ATCATTTTAC CAAATGTCGA ATTTAAACTT 
    TGAGAAAAGG AGAGCAGTGC GACTAATGAT GAGCCATGAC CATGGATATA 
    ATTGTACGGC GGCATCATCA CACGGCCGCA AATACCCGAT TAGCTGTCTC 
    AGCCGAACCG CCCATTTTAT TTTATTTTAT TTTTTTGTCA TCATTTGGAC 
    AACTGCCTAC TAAAAAAGTC GAACTCAACG TGGTGTTCAC AATTGGGCCT 
    ATAAAGTTTA ACACAAATGG GCCCAGTTTT TAATAATCCC TTTTATCTCA 
    GCGAACGCGT TTATCTAACT ATCCCACATT TTGCTGCAAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1528796 [Map]; Strand: c
      • AT4G03445.1 - [+] show detail - MIR447A; miRNA
        Distance: -426; Region: promoter
    Flanking Genome Sequence: GT121 - 3-prime edge 
    CCTGATAGTA TCCAATTCAA CATCTCCATG CTTCGCTCGA AAATTCCATA 
    ACCCTAAACA TTAAAAGTCT TCGAAAATAT AGGACGCTAT TAATAGGCTG 
    ATAGCATTAG AGTGATGCAT TCAACAGTAT CTAATCTGTC CCCAATCCTC 
    CAAATCTGCG TTTTTCTCCT CCCTTTTCGC TTCGATTTCT GATTTTGATT 
    ATTTGTCCAT TCCGTGATTC CATAAAGAGA GCAGTTCCAT CGAGGTTTCA 
    TCATTTTACC AAATGTCGAA TTTAAACTTT GAGAAAAGGA GAGCAGTGCG 
    ACTAATGATG AGCCATGACC ATGGATATAA TTGTACGGCG GCATCATCAC 
    ACGGCCGCAA ATACCCGATT AGCTGTCTCA GCCGAACCGC CCATTTTATT 
    TTATTTTATT TTTTTGTCAT CATTTGGACA ACTGCCTACT AAAAAAGTCG 
    AACTCAACGT GGTGTTCACA ATTGGGCCTA TAAAGTTTAA CACAAATGGG 
    CCCAGTTTTT AGTAATCCCT TTTATCTCAG CGACGCCGTT TATCTAACTA 
    TCCCACATTT TGCTGCAATG TGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27418854 [Map]; Strand: w
      • AT1G72860.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT121 - 5-prime edge 
    CAAGGGAAGG TTGTCAAGGG GAAATGCGTC CCAATGTAGT AACCTAAGCC 
    TTGATGAAAG TAGATTTGTA TCGTCACCAC TGAAAAGCAG CTTGGACTTA 
    ATATGGTTCG AGTGCTTGTA GATCTTGAGG AATTTGAGAG TATCGTGGTA 
    CGCTGTATAC CCTCCCAGAT GCAATGCATA AACCATGTCA CACATATGTA 
    GTGCCATGCA ATTGGTTGGT TCGCTTGTCT GTGGGATTAA ATACGATAAA 
    ATTAGTTGGC CTACGAACAA GCTTAGTGCA GAAACAACCA TGAACAACAA 
    CGATGTTACA GATAGACACT GTAAGTGCTT ACCGTGTTAC GTTTCAGTAA 
    TTCATAAATT TCATAAGGAT TCCACAAAAC TCCTCGTCCA TGGCGCCTCT 
    GCATGGATTC TTGATTAACA ATTGCTCTTG CAGTTTGGTC TACCAAATTA 
    TGCATCTTTA TATACCCACT GGCTGTTATT TCAATGAGAG ACTTCTCAGC 
    CAATATTTTT A

AT1G72860.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, leaf; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G17600.1); Has 17128 Blast hits to 12682 proteins in 562 species: Archae - 4; Bacteria - 839; Metazoa - 1175; Fungi - 47; Plants - 14820; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03445.1

Model type
miRNA
Short Description
MIR447A; miRNA
Curator Summary
Encodes a microRNA that targets several 2-phosphoglycerate kinase-related family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGGGACGAGAUGUUUUGUUG
Link
InterPro Scan - TAIR