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GT12144

CSHL Arabidopsis genetrap mutant lines

Original: GT12144

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12144

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16308919 [Map]; Strand: c
      • AT4G34040.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -240; Region: promoter
    Flanking Genome Sequence: GT12144 - 5-prime edge
    TCCTACTTTC TCCTACTCTC ATTAACTTTC TATTATAAAC AATTACTTTA 
    TATAGTAATC AAACGTCTTT AAGTTTTTAA ACGGTCCATT TTTCACATTT
    ATTACAAACA CCAAAAAAAA AAGTGAAAAA AATCTAACGT AGGAAAAGAA
    AATTGGTAAA GCACCTTCAA GCAACGTCTT GAATAAATAA ATAAAAACTC
    TTTACAATAA ATTATGTCTG CCTGTTTCAA TTTACCAAAC TTCTTTTGAT
    TAAAATCTTT GGAACCAAAT TAAATTTTAA TTACCCGAAA ATGTGTTTGT
    AAGAAAAGAT AGTATCATTC ATCACATGTA ATCTCTACGC CTCTTAATCC
    TCTCTTCCCT CATCCACTGC TTCTTTTTTT AATAACCCAT TT

AT4G34040.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G15530.3); Has 8873 Blast hits to 7809 proteins in 315 species: Archae - 0; Bacteria - 89; Metazoa - 2441; Fungi - 580; Plants - 3871; Viruses - 41; Other Eukaryotes - 1851 (source: NCBI BLink).
Link
InterPro Scan - TAIR