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GT12162

CSHL Arabidopsis genetrap mutant lines

Original: GT12162

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12162

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT12162 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGATAGA 
    AATGGACGAT ATCAGTTGTT TGTTTCATTG TTTTATCAAT TCTTATACTT 
    GTTTAGGCCG TAGGTTTTTT AACAGAGCGA AACAGAGCAC AAATGAAGAG 
    ATAATGAAGG ATATACCCGA AAGAAAATAT TCACGGAACC AGACAGACTT 
    TTGACTATAA GAATACACTT AATCAACTAC TCTTTATTAG TACAACAAGT 
    AGACAACACT CAAAACTATC TTGCCATGGG AACCACGGAA GTGTCCAAGT 
    CAACGTTCAT CTCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8123151 [Map]; Strand: w
      • AT3G22920.1 - [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT12162 - 5-prime edge 
    CTACTTTCAT CCGAGTCGGT CATGGAGATG ATACCTGGAC CGTCTTCGTG 
    GTTCAAGATA AAGTACTCGT CGTCTAATTC ATCTCACTCG ACGAATTCGT 
    TTTCGAAGAT GATGTCTCCT CCACACCACA TGAGATCGGG AACAATATGG 
    TCGAAGATTG ATCCTTTGTA GTGGATTGGT TTACCACACT TTCCGATGCC 
    TCTCTCGCCG GTACAGAGAC CCCTGAAGTT CTCCGCCGTC CATGGAGTCA 
    AATCAGCGAA GAGCTCTATC ACGATCCGAC CAGCGGGTTT GCCATCCACG 
    GTCAAATCAA AGAAAACTTT AGGGTTAGCC ATTGTCGGAG AGAAATCTAG 
    TATTAGGGTT TCTATGGTTT AGCACAATTT TTATAACGTA AATACCATAA 
    TGGAGCAAAT AGTTCTTATA TATCAATAAT ATAGATTTTC CTTGTACAAT 
    TGCTATTTAG TTTAGGAAAA CTAAATCCCA CAGTTGAAGG GCTTTATAAG 
    CCCAATAAAG AAAAAAA

AT3G22920.1

Model type
Protein coding
Short Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: central cell, male gametophyte; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: rotamase CYP 3 (TAIR:AT2G16600.1); Has 8486 Blast hits to 8480 proteins in 1473 species: Archae - 70; Bacteria - 2102; Metazoa - 2660; Fungi - 1083; Plants - 1079; Viruses - 4; Other Eukaryotes - 1488 (source: NCBI BLink).
Link
InterPro Scan - TAIR