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GT12211

CSHL Arabidopsis genetrap mutant lines

Original: GT12211

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12211

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1318165 [Map]; Strand: c
      • AT4G02970.1 - [+] show detail - 7SL RNA1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT12211 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTGC ATCATGCAAG 
    AGAGGGGTGA GTTAAATCTG CCTCACGAAG CGTTTCACTT GGTAAGCAGT 
    GAGTTACCAT TGATCGAAAC TAAGTCATTC AAGTGGAACC GTGTTGCTGA 
    TGGCGATACA ATTGAGATTA TCCGTAGACT CGTGCCTTTT TGCAGTCTCC 
    TCTTTTCTCA TACCTAGTTT TTAGTCTTTC TTCAAGTTTT CAAATATGCT 
    AAGACATGTA ATTACCAATA TTGTTGTTGT TAAAAGAAGA GAAACTAGTT 
    CTTCTTGAGT TAACATCTTT TCGAAATTAG CTCTGTACAT TCTCTAGAAA 
    ACATTACGAT CGGGTGGTCT AGTTCACATT TCTTTTGGTA TTTTTCAATG 
    TCTAGTTACA GCAACAAGTA TGAAGATCAA ATGTTGAATC TTTGTTGATA 
    AAACAGGGCA GAAAGACAGT AAAGTCTCTT GCTTTACTCA AAAACTTAAC 
    CAAAAAAAAA ATCAAAATAC TAATTGCGTC AAAACACTCT GCAACTAATG 
    AACGATAACG TTAAAGAACT GAAAAACGAG TTGATGAAGA TTGAAGAGGA 
    AGGTGAGTAA AAGCTGCCTC A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1318085 [Map]; Strand: c
      • AT4G02970.1 - [+] show detail - 7SL RNA1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT12211 - 5-prime edge 
    TTGCTCTTAC CAGCTCTTTC CTCAGTTCTT CGACGTTATC ATCTGCGTTA 
    ACCTCTACTT GAATCATCTT GGTATCTTCT TGATATGGCT TCACATGTAC 
    TGTAAACTTC ATCGGGTTGG TCTTGATCTT CTTATCCACA GGCGAATCTG 
    AATCTCTAAG GACCTCTTTG GCTGTGCCTG ACGTTGAAGC TTGCTCGGTG 
    GTTTGAACCA CTTGATTTGT TCTGCCTCCA ACCGTCACAG TTGCTGAATA 
    TTTAGGGCCA AGTAACTCAT CAAGTGAATA AGCCGGTAGT GATGAATATA 
    CATTGTGGAC TCTCCTCGCC ATCACCCTCG TGAGCTTTTT GCTCTCCGAT 
    GAATCTTGAA TGCCACAGAA CTCTTGTTTC TTATCATCAA TTTGTTTTGA 
    TTGCTCGGTT TGCTCGTTGC TCTGATTAGG GTTAGCATCA GGAGAGATGC 
    GGAGAAGGAG ACGAGATTCG AAGAGGATCA TGTAATCAAT CTTATGAAGA 
    TCATCTTCAA GAGCCTTGCC ATCCAAGTAA AGGATTTGTT TCGAAACAGG 
    GATACCTTGA GACTTCTCGA TCTTCTCTTT TATCTGTAAC ACTGTTTCGC 
    CGAAATCAAT AGTAATGGAG AACGATGAGC CAGTCTCAGT ATCGATGTAC 
    ACGTTCATCG TTGTAGTTTC AAGATCAGTG GAGAGAGACT AAATGAGGAA 
    GAGAGAAAGA GAAACTGATG ATTTGTGACG AGAGTTTGCT AATTTCGTGA 
    TTTCTCTCCT TACTGATATG ATC

AT4G02970.1

Model type
Protein coding
Short Description
7SL RNA1
Curator Summary
Signal recognition particle. Type 4 of RNA polymerase III dependent genes.
Computational Description
7SL RNA1 (AT7SL-1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G03350.1); Has 8670 Blast hits to 3996 proteins in 634 species: Archae - 0; Bacteria - 6; Metazoa - 3720; Fungi - 1035; Plants - 2265; Viruses - 166; Other Eukaryotes - 1478 (source: NCBI BLink).
Link
InterPro Scan - TAIR