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GT12237

CSHL Arabidopsis genetrap mutant lines

Original: GT12237

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12237

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3847410 [Map]; Strand: w
      • AT1G11420.1 - [+] show detail - DOMAIN OF UNKNOWN FUNCTION 724 2
        Distance: -538; Region: promoter
      • AT1G11430.1 - [+] show detail - plastid developmental protein DAG, putative
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT12237 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGCG 
    GTGGAGATGC TCCGGAGCAG AGGAGTCCAT GAATCGCCAA CGCGGATACC 
    AGAGAGTGTA GAGAAACGAT TCAGGTGGCT TACGGGGAGA AGAGTTTTGA 
    GGAGAAGCGA GGAAGAAGAA GTTGTTGTGA AGGAAGCCAT TGCAATTGCT 
    GAAATCGAAG AGAGAGTTTT GGAGAAGATA AGATATATTT TTACTTACCT 
    GCTTCGTGAT GAGGATCCTA TGAAACGACA CCGTTTTTAA TTAGGCCCAT 
    TAGATAGTTT GGGCCTGATA ATTTCTTAAA TCATTTTCTC ATAATTTCAA 
    GCGCCAAAAA AAAAGAAAAG TAAATTGGGA AAGAAAAAAA GAAAACACAC 
    TTTCCCCGAT GTGTATCGTG AATATCGACA CTAAGCACAG ACACAGTAGC 
    ACTGTGTTTT GGTTGCAAAA AGTCTCCTTC ATATAATCAT ATCTATGGTT 
    TTCGGGTTTC AGCAAAAAAG TCTTTTTTTA GATTTAGGGT TAGCAGAGCA 
    AAAATGAGCC GTTATTAGTT TTCATTCAAG GGTTTTTGAG ATGGAGCAGA 
    TGATATTCAT TAGAAAAGAC GACAAAGTAG AAGTTTTTTC TGAAGAAGAA 
    GAGTTAAAAG GGTCTTATTA CAGAGCGATT CTGGA

AT1G11420.1

Model type
Protein coding
Short Description
DOMAIN OF UNKNOWN FUNCTION 724 2
Curator Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.
Computational Description
DOMAIN OF UNKNOWN FUNCTION 724 2 (DUF2); FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 603 Blast hits to 525 proteins in 93 species: Archae - 19; Bacteria - 36; Metazoa - 149; Fungi - 17; Plants - 302; Viruses - 1; Other Eukaryotes - 79 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11430.1

Model type
Protein coding
Short Description
plastid developmental protein DAG, putative
Computational Description
plastid developmental protein DAG, putative; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT3G06790.2); Has 252 Blast hits to 229 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR