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GT12291

CSHL Arabidopsis genetrap mutant lines

Original: GT12291

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12291

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9450169 [Map]; Strand: c
      • AT1G27200.1 - [+] show detail - Domain of unknown function (DUF23)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT12291 - 3-prime edge 
    CTTCTTTCAA CTTGAAAATG ATGTAACTTT CATTTGAGCA ATGAGCTTTG 
    TGAGCAACTT CAGGGCGGAT TATTCGACTT GTGTCTCTCG GGGTTCGCTT 
    GTCTACAAGT GTAACCTACG GTCACGCCTT GTGATGGAAC CGAGGTCAGA 
    CCGGATGGAC CGTAGCTATG ACAGTCCGTT CTGATCTCTC CAACCAAATC 
    CCAAGAAGTG TAGTTCGATA CAAGCGACTT CAAAGCGTTT TTGCTCGGTA 
    AGCCTTGAGA GCGATGCGTA GGGAAGTAGT AGAACTCGTC GACATCGAAG 
    AATCCAACCC AATTGCATTC TTCTTTCGCT CTAACCGCAC AATGCGAAAA 
    ACCGGCTTCT TGAGTCTTGA TCCAAGGCCA AACATGTCGA CTCACATTGT 
    AATTCTCCGA ACTAAGCAAC TCAATCTCCT CTTGTATACC ATCATCGCTG 
    TTGTTATCAT ATATAAACCA ACGTTCGACA CCGAGCCACG AGTGATACAT 
    GATCCATTCA CGCAAGAACG GAGCTTGGTT CCATAACATT GTACAACAC

AT1G27200.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF23)
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 321 Blast hits to 319 proteins in 87 species: Archae - 0; Bacteria - 165; Metazoa - 2; Fungi - 4; Plants - 113; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR