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GT12325

CSHL Arabidopsis genetrap mutant lines

Original: GT12325

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12325

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15741853 [Map]; Strand: c
      • AT2G37500.1 - [+] show detail - arginine biosynthesis protein ArgJ family
        Distance: 0; Region: intron5 (CDS)
      • AT2G37500.2 - [+] show detail - arginine biosynthesis protein ArgJ family
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT12325 - 3-prime edge 
    TAACCCTGAA AAACGTATAA CAATAATGAG TGATCCATAG CTAACAACCC 
    TATAGATTTC AGGCTACTTC AAAATCATAT GAATTAACTC CTAAACAACA 
    CAGCTCGAGA TATCTTACCG TAGCTGCATT GGCCTGACCG GCATTGATCA 
    ACACTGCACG AGCCTAAAGA ACACTAAAAG TTCAATGCTC AGAAGCACAA 
    AATGCATTGT TCTAAGTCCG AAATCCAATT AATGACATAG AGGAGTACCG 
    TTTTCGAAGT CTCAAGAACT TTTTTACAGT AAACTACAGG AGCAGCAGCA 
    ACCACATTAG TAGTAAACAC ACCTGAAAAT TATTTTCAAG ATAAAAGTCA 
    AAAAAGCTTG TTTACATTTC AAACAAACAA AACCAACATT AAAGGAGCCA 
    CAAAAGCCAG CATTGGACCT GCAGCTACAG CTTCGACATC ACATGTTACA 
    AGAGCGAGAT CAGGTTTCTT CCCTGCAGCT CGTAATCCAG CATACATACC 
    AGCAGCTTTA AACCCTTTAG CAGCTGTAAC TCCACCAGCT ATCTAAACAA 
    AACACTCAAA TTTTCAGACT TTGATAGCAA CTTCTCGAAA AGATTTCTAA 
    TTTTATATGC AATTCAAAAC CTGTTTCCAT GACCCTTGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15741853 [Map]; Strand: c
      • AT2G37500.1 - [+] show detail - arginine biosynthesis protein ArgJ family
        Distance: 0; Region: intron5 (CDS)
      • AT2G37500.2 - [+] show detail - arginine biosynthesis protein ArgJ family
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT12325 - 3-prime edge 
    TAACCCTGAA AAACGTATAA CAATAATGAG TGATCCATAG CTAACAACCC 
    TATAGATTTC AGGCTACTTC AAAATCATAT GAATTAACTC CTAAACAACA 
    CAGCTCGAGA TATCTTACCG TAGCTGCATT GGCCTGACCG GCATTGATCA 
    ACACTGCACG AGCCTAAAGA ACACTAAAAG TTCAATGCTC AGAAGCACAA 
    AATGCATTGT TCTAAGTCCG AAATCCAATT AATGACATAG AGGAGTACCG 
    TTTTCGAAGT CTCAAGAACT TTTTTACAGT AAACTACAGG AGCAGCAGCA 
    ACCACATTAG TAGTAAACAC ACCTGAAAAT TATTTTCAAG ATAAAAGTCA 
    AAAAAGCTTG TTTACATTTC AAACAAACAA AACCAACATT AAAGGAGCCA 
    CAAAAGCCAG CATTGGACCT GCAGCTACAG CTTCGACATC ACATGTTACA 
    AGAGCGAGAT CAGGTTTCTT CCCTGCAGCT CGTAATCCAG CATACATACC 
    AGCAGCTTTA AACCCTTTAG CAGCTGTAAC TCCACCAGCT ATCTAAACAA 
    AACACTCAAA TTTTCAGACT TTGATAGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15741724 [Map]; Strand: c
      • AT2G37500.1 - [+] show detail - arginine biosynthesis protein ArgJ family
        Distance: 0; Region: intron6 (CDS)
      • AT2G37500.2 - [+] show detail - arginine biosynthesis protein ArgJ family
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: GT12325 - 5-prime edge 
    GTTACCAAGA TATGTTAGAT TGTGTTGGAT CTATTGCGAC GGTATGCTTT 
    TGGTGTCTTT CATTCCCATG TCTCCCGCGA AACTTCGTAT CTTTCAACAC 
    TGTTACCGTT TGTTTCTTTA CCGTTGTAGC TACTTAAAGT GAAGCCAGAG 
    GAAGTGTTAA TTGAGTCAAC TGGTGTTATC GGTCAGAGAA TAAAAAAGGT 
    ATAACTTATT TCTTTCTCAT TTTTCCTCCA TGCAAGTGCT TGACAAAGTT 
    AGTTTACTCG TGAATCTTTG CAGGAAGAGC TTCTCCACGC ACTTCCAACT 
    CTAGTCAACT CGAGATCAGA CTCTGTGGAA GAGTATAATC TTCTTTTCTC 
    AATCTCTCTT TTAAGTTCGT AGGTCACAGT CTTCACTTTC TTTGGTAGCC 
    ATTGGGCATA ACCATATGAA TGTTGAAATG CAGGGCAGAT TCTGCTGCTG 
    TAGCTATCAC AACAACAGAT CTTGTAAGCA AGAGTGTTGC AGTTGAATCA 
    CAGGTAGGTT TAAGAAACAC GTTGTATACT CTATTTCTAG CATTGATATC 
    TCTTACAAAA TTTTTGACAT T

AT2G37500.1

Model type
Protein coding
Short Description
arginine biosynthesis protein ArgJ family
Computational Description
arginine biosynthesis protein ArgJ family; FUNCTIONS IN: glutamate N-acetyltransferase activity; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arginine biosynthesis protein ArgJ (InterPro:IPR002813), Peptidase S58 DmpA/arginine biosynthesis protein ArgJ (InterPro:IPR016117); Has 5525 Blast hits to 5515 proteins in 1540 species: Archae - 87; Bacteria - 2817; Metazoa - 2; Fungi - 139; Plants - 50; Viruses - 0; Other Eukaryotes - 2430 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G37500.2

Model type
Protein coding
Short Description
arginine biosynthesis protein ArgJ family
Computational Description
arginine biosynthesis protein ArgJ family; FUNCTIONS IN: glutamate N-acetyltransferase activity; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arginine biosynthesis protein ArgJ (InterPro:IPR002813), Peptidase S58 DmpA/arginine biosynthesis protein ArgJ (InterPro:IPR016117); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR