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GT12347

CSHL Arabidopsis genetrap mutant lines

Original: GT12347

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12347

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16169667 [Map]; Strand: w
      • AT5G40405.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT12347 - 5-prime edge 
    ACTTTCTCCC TGCTCTTCGG GAAATGATCT TAAACCGGAT AATTACACTG 
    TCAACTTCTT GGTTCAGGCG TGTACGGGGT TAAGGATGCG TGAGACAGGG 
    CTTCAAGTTC ATGGTATGAC TATCAGACGT GGTTTTGACA ATGACCCGCA 
    TGTCCAGACT GGGTTGATTT CTTTGTATGC GGAGCTTGGC TGTCTGGA

AT5G40405.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 34577 Blast hits to 13703 proteins in 254 species: Archae - 0; Bacteria - 3; Metazoa - 86; Fungi - 90; Plants - 33863; Viruses - 0; Other Eukaryotes - 535 (source: NCBI BLink).
Link
InterPro Scan - TAIR