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GT12520

CSHL Arabidopsis genetrap mutant lines

Original: GT12520

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12520

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17936558 [Map]; Strand: w
      • AT4G38250.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT12520 - 5-prime edge 
    CTGTGCATCA ACCTCTTCTT CACCTTCCCC TTGATGATGA ATCCAGTGTT 
    TGAGATAGTG GAGAGGCGTT TCTCACGCGG GATGTACTCT GCGTGGCTCA 
    GATGGGTACT CGTCTTAGCA GTGACTCTGG TGGCTCTTTT TGTGCCAAAC 
    TTTGCAGATT TTTTGTCATT GGTTGGCAGC AGCACTTGCT GTGTGTTAGG 
    GTTTGTGTTA CCTGCATTGT TTCATTTATT GGTGTTCAAG GAAGAGATGG 
    GGTGGCTGCA ATGGAGTTCA GACACAGCGA TTGTGGTACT AGGTGTGGTT 
    CTTGCTGTGT CGGGAACTTG GAGTTCCCTG AGTGAGATCT TCTCTGTCAA 
    AGTGTGAGCG TCCGTGAAGT CAGAGATTGG AGAGGTTTTT CTCTCCTTGT 
    GTGCAATTAT GTATATGGAA TTGGTTGTGG TTTTAAGAGT AACTGTGATT 
    GTATTTGTAT TTTGATGGTT TGGAATAAAA GAGATCAGCT CTGTCTTCTG 
    TTTTGTGTTT ACATGTACAA CATATGTGAG AGTTTTGATT TCTCAA

AT4G38250.1

Model type
Protein coding
Short Description
Transmembrane amino acid transporter family protein
Computational Description
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G42005.1); Has 5006 Blast hits to 4918 proteins in 286 species: Archae - 16; Bacteria - 54; Metazoa - 1812; Fungi - 943; Plants - 1365; Viruses - 6; Other Eukaryotes - 810 (source: NCBI BLink).
Link
InterPro Scan - TAIR