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GT12576

CSHL Arabidopsis genetrap mutant lines

Original: GT12576

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12576

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 809524 [Map]; Strand: c
      • AT3G03400.1 - [+] show detail - EF hand calcium-binding protein family
        Distance: -366; Region: promoter
    Flanking Genome Sequence: GT12576 - 5-prime edge 
    ATTGATGATG ATACATCATA ATTCCTCTGG CTCTTTGTGA AGGTGATTTA 
    TTAACTTTTC TAATAAAATC TTGTGATTAA TTTCCCTTGG GCTCTTTGTT 
    CAACCACGTG TAAGACTTTG TAGATTGGTC ACCTACATGG AGCTATCAAT 
    AAGATGAAAC AAATCCATTT TAGATGAACA TCCCCACATT CTTGGGAAAT 
    TTTGATTTTT TTTTTCTTTT AAGGGAAAAA AGGATTTACT TCTTTTT

AT3G03400.1

Model type
Protein coding
Short Description
EF hand calcium-binding protein family
Computational Description
EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G17470.1); Has 13690 Blast hits to 10114 proteins in 1236 species: Archae - 0; Bacteria - 48; Metazoa - 5217; Fungi - 2887; Plants - 3646; Viruses - 0; Other Eukaryotes - 1892 (source: NCBI BLink).
Link
InterPro Scan - TAIR