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GT12670

CSHL Arabidopsis genetrap mutant lines

Original: GT12670

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12670

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5349402 [Map]; Strand: c
      • AT5G16336.1 - [+] show detail
        Distance: -628; Region: promoter
      • AT5G16340.1 - [+] show detail - AMP-dependent synthetase and ligase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT12670 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAACAATAC 
    TCCATCGATT CCTCCTCCGT AGGTTACCCA CTAAACCCAT TTTTCAAACT 
    CACAAACGCA CAGCGGAGGC TCTGCCCAGA ACTCATCAGG ATCTAGCCAC 
    CACCGCCACT TCATTCACCG ACAGAATCGA GTACAACACC GTTTCAACCT 
    CAACACTACT CACATTATCA CCTCCCGTTA TAATTATATC TTTCCATCTA 
    TCTTTGATCT CTAGATAACC ACCGGAATGA ATCACACCAA CATCTCCGGT 
    GTAAAACCAC CCCTTCTTTA AAGCTTTCTC TGTTCCGACC GGATCATTTA 
    AGTAACCGAG CATGACCGAG CTTCCTCTCA TCACAATTTC TCCGACAGTT 
    TCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13412965 [Map]; Strand: c
      • AT4G26580.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G26580.2 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: intron1 (5UTR)
      • AT4G26582.1 - [+] show detail
        Distance: -614; Region: promoter
    Flanking Genome Sequence: GT12670 - 5-prime edge 
    CTGCTGAATA TCCATCCATG TCTTTTTTTT TACATGTACT TTAATTGCAT 
    ATTTTAAAGA CTTTTCATGG GTTTTTAGCT CAAGCTTTAC TCTGGTTCCC 
    TTTGCTCCTG GTCAGGAGAT CAAATCAAAG ACCTCTCTGT TTCCGAAATG 
    AGTACCCGTT ATTCCTCTCA GTTGGCAAAC TCAGCCATTA ACTCCCTCCC 
    TGGCCCCTCA TCTTCTTCCT TCGCTTCCAC GCAACTGGGT GAAAACCCTC 
    CCCCGGGTCC CGAGAGGTCC CCATCTTCTT CCTTCTTCAT GAAACTTGGC 
    CTGGGGGTAT CTAGAGCAAG GGGGTTCCTT TTCTTGGGAA AAGTCTTTCA 
    TTACCCGAAC GCCCCCAGAA CCCAACTTGG GCCCCATCCT TTCCATTCTA 
    TCCGTTGGAA GGGATCCAAA CTCCTCCCTT TACCTTTACC GAACCCTGGG 
    AAAACCTCCA CCCCAACTTT GGCCAAAAAC CAAAGGGCTG GTTGGCCCAA 
    GAA

AT4G26580.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G55970.2); Has 9396 Blast hits to 9372 proteins in 282 species: Archae - 0; Bacteria - 0; Metazoa - 2389; Fungi - 691; Plants - 4936; Viruses - 28; Other Eukaryotes - 1352 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26580.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G55970.2).
Link
InterPro Scan - TAIR

AT4G26582.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G26590
Link
InterPro Scan - TAIR

AT5G16336.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT5G16360; NC domain-containing protein
Link
InterPro Scan - TAIR

AT5G16340.1

Model type
Protein coding
Short Description
AMP-dependent synthetase and ligase family protein
Computational Description
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl activating enzyme 5 (TAIR:AT5G16370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR