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GT12737

CSHL Arabidopsis genetrap mutant lines

Original: GT12737

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12737

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17861735 [Map]; Strand: w
      • AT4G38010.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: -474; Region: promoter
      • AT4G38020.1 - [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT12737 - 3-prime edge 
    ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTTCA AACTCTATTC 
    GCCGGAGATT TATCTGAACC GTAGATAGAG AGATCATCTG AAGGGTTTAT 
    CTGAATCTGG GTTCTCGGTA ATTGGGCTGA CGAAGCTCGA AGCTTTGACG 
    CATAGGTTTT AATTTCAAAT GGGAGAAGTG ATGACACAGT TTGTGAAGCG 
    AATACACATC CGCAATGCAT TGCACTTCTG CAACTAATCC GATTGATTTC 
    TCTTCTTTCT CCGGTGAAGC CTAGAGTCTA GAGAGGTCTA AGAATTTTAT 
    AGAAAAGCCC AATCTGTTAA AAAGATAGGC CCAATAATAG GCCCAATAAG 
    TGGTTTTAAC GGTAAACCCT CTTCGTCATC CTCAGGTTAG CTCTCTGTTT 
    CAGTCTTCCG CTTCATCT

AT4G38010.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 36420 Blast hits to 13424 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 56; Plants - 35898; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38020.1

Model type
Protein coding
Short Description
tRNA/rRNA methyltransferase (SpoU) family protein
Computational Description
tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 12174 Blast hits to 12170 proteins in 2688 species: Archae - 7; Bacteria - 9680; Metazoa - 153; Fungi - 96; Plants - 106; Viruses - 0; Other Eukaryotes - 2132 (source: NCBI BLink).
Link
InterPro Scan - TAIR