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GT12771

CSHL Arabidopsis genetrap mutant lines

Original: GT12771

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12771

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7129907 [Map]; Strand: c
      • AT3G20440.1 - [+] show detail - Alpha amylase family protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G20440.2 - [+] show detail - Alpha amylase family protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G20440.3 - [+] show detail - Alpha amylase family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT12771 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACA 
    AGAGGATACA TACCCTGAAG CAAAATCTCT GAAATCGAAA TGGCGTTTGA
    AAATCTCATC TTTAAGGTCT TTCAAAGCTT TATGCCTACA GAAAAACGAA
    CAGGCTTATT ATACACAGCT GTAATCAAAA TTGATCCTTT TTTGTTGCTC
    AAAATCAAAG TTGATACATT TTTATACCTT TCCCGGAGAA ATTGAGCAAA
    GATTCTGTCA GCAATTCCGA GTCTGGTGAG AAACCCAACA GGGTCAACTC
    CAGCCTCAGC GTCGCTAGTG CTCTGGCTCT GACTCTTCTT TTTCTGTTTC
    TCCTGGCGTG GTCTCTCGGC GGCGAAGCAA GTGATTTTCA ACTTGATCTT
    CCTGGGAAAA TTGACTCCTG AGATTCCCAG GCGCCGTTTC TCGGAAACGA
    CAAGATTGTT TGGGTGGAAA GAGAATCTGG TTTGATTAGA GAGGGACACC
    ATTTTTGTTG GTGCTACGAA GAAGATTTGT

AT3G20440.1

Model type
Protein coding
Short Description
Alpha amylase family protein
Curator Summary
BE1 ia a putative glycoside hydrolase. It plays vital roles during embryogenesis and in carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.
Computational Description
EMBRYO DEFECTIVE 2729 (EMB2729); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity; INVOLVED IN: post-embryonic development, carbohydrate metabolic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.1 (TAIR:AT2G36390.1); Has 7798 Blast hits to 7473 proteins in 1903 species: Archae - 76; Bacteria - 5544; Metazoa - 204; Fungi - 180; Plants - 1205; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20440.2

Model type
Protein coding
Short Description
Alpha amylase family protein
Curator Summary
BE1 ia a putative glycoside hydrolase. It plays vital roles during embryogenesis and in carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.
Computational Description
EMBRYO DEFECTIVE 2729 (EMB2729); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity; INVOLVED IN: post-embryonic development, carbohydrate metabolic process, embryo development ending in seed dormancy; LOCATED IN: plastid; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.1 (TAIR:AT2G36390.1); Has 10844 Blast hits to 10504 proteins in 2056 species: Archae - 101; Bacteria - 8205; Metazoa - 231; Fungi - 225; Plants - 1250; Viruses - 0; Other Eukaryotes - 832 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20440.3

Model type
Protein coding
Short Description
Alpha amylase family protein
Curator Summary
BE1 ia a putative glycoside hydrolase. It plays vital roles during embryogenesis and in carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.
Computational Description
EMBRYO DEFECTIVE 2729 (EMB2729); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity; INVOLVED IN: post-embryonic development, carbohydrate metabolic process, embryo development ending in seed dormancy; LOCATED IN: plastid; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycosyl hydrolase, family 13, subfamily, catalytic domain (InterPro:IPR006589), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.1 (TAIR:AT2G36390.1).
Link
InterPro Scan - TAIR