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GT13107

CSHL Arabidopsis genetrap mutant lines

Original: GT13107

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13107

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22788373 [Map]; Strand: c
      • AT1G61700.1 - [+] show detail - RNA polymerases N / 8 kDa subunit
        Distance: 40; Region: intergenic
      • AT1G61710.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 486; Region: intergenic
    Flanking Genome Sequence: GT13107 - 5-prime edge 
    CCTACTTTCT CCCTGCCTAC TCGTGATCTA GATTGTAGAT TTGAACCTTA 
    TCAAATGTGT GATCTTTACT ATTTATCAGG ATTAGATTAC CAAAAACAAA 
    TCAATAGATG ATGACTCTAC AGGCTTGAGC TTTATTTTTG GCTCGAAAAA 
    TTGTCTAGAT TTCTAAAACC GAACAAGAAC ATCAGAAAAC ATTGAAATAT 
    CAACATTCCT AGTTATAAAT TAAACCAAAA TTTCTGAAAC ATTGTGGTTT 
    TATTAAGACG CCCACATGGA TGAGATGCAT CACTCCTTCA CTTCAGCTCT 
    TGGATGATTT GTTATTCATT ATAGCATCTT TTTTTAATTG GGGTCGGATT 
    TCTCCATAGC TGCAAAAGAG AAGTATTCGA ATAAGCAAGT TAACAAAAAG 
    AATAGAGCAG AGGCAACACA AGGCAAAAGA ACCGGGTATG GAGATATTAC 
    TGTTGTAGTT TAGAAGCTTT TCGATTAGAT CGACATGAGT CATAAGCATA 
    CGCCTGCAGC AGTAACGGAC TAATCCAAGC GCGTCAAGAG CATCCCTGCG 
    TATTCCAAAA CCAAAATTCA GATTTTCAGT TCAACAAAAT GCAATTTTAG 
    CATAATGCCT AAAACCAAAG TAGCTAAAAG ATTAGATAGA AACAAGAGAA 
    TGGAATATAT CAGTGATCAC CTACCATCAT GCTCTTTACT AACACTTAAG 
    ATAACATCTA TGAACTTCAA GATGATCAAA TTGCAACTAA AACAAAAACG 
    AAATTGCGCA ATTCCAAATC ATGTAGCTTA ACACCTAGAA CCAAACGGGC 
    TAAAGATTAC ACTAGCGATT AAACAAGAAA TCGAAAATCC C

AT1G61700.1

Model type
Protein coding
Short Description
RNA polymerases N / 8 kDa subunit
Curator Summary
Protein of unknown function that is homologous to the At1g11475 locus that encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V. Homologous to budding yeast RPB10.
Computational Description
RNA polymerases N / 8 kDa subunit; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8kDa subunit (InterPro:IPR000268), RNA polymerases, subunit N, zinc binding site (InterPro:IPR020789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: RNA polymerases N / 8 kDa subunit (TAIR:AT1G11475.1); Has 943 Blast hits to 943 proteins in 326 species: Archae - 263; Bacteria - 0; Metazoa - 146; Fungi - 184; Plants - 71; Viruses - 3; Other Eukaryotes - 276 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61710.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G61840.1); Has 735 Blast hits to 396 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 732; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR