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GT13165

CSHL Arabidopsis genetrap mutant lines

Original: GT13165

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13165

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7492556 [Map]; Strand: w
      • AT1G21400.1 - [+] show detail - Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
        Distance: -870; Region: promoter
    Flanking Genome Sequence: GT13165 - 5-prime edge 
    ACTTTCTCCC TGGATGTAAT GGCATGGAAC TGGATGGTGA CATGGTTTTT 
    GGTACAAATG AGCTGTGAGC AAGAATTTGA GGCAATTGGT TTGTTTCACA 
    AATTGAACAA TTATATTGTG TGGTGACCAG TGATATGTTC ATTATATAAT 
    GTGGAATTTG CTCAAAGGAA AGCATATCAC ACACACTTGT TAAGAGATGC 
    ATTCACAGAA TCAACGACAA TCTGAAGTCA GTAACTCTGT TCCCACAATT 
    TTGGATACGA AACACACAAA TTTAACCATA TGTCTATACG AAATAGTGGT 
    AAGTTAGGTC TCTAACTAAC TCCCTACTAT ATGATGTTAG TCCAAGCCAC 
    AAATACAAGT TCAGGTCCAA GAAAGCTTTA CTGTTAGGTT AGATGTTACA 
    TACCAATGAA TCTTTAAATA ACAATTCCAC CATCTAAAAA TATATCAAAT 
    CGTTTCTGGT GATTGTTGTG TAACTTTCAA CTACTCTATA AATGGAAAAA 
    TGTTTTCTCG TGGTATCAAT AAAAAAACTT TTTTTTTCCT TTGTTTTTCA 
    CGGACGTCAT GGAAAATTCA AAGAAAGATA TAAATGACAC GCAAGTAGGT 
    GACTTTACAA TGTTGCTATC GTTGGATAAA GATCAAAATT CAATAAAAAG 
    CACAAGTACA GTTTGGGTTT GGTTGTTGAA GAATCTTTAA ATGATTTGCT 
    AATGTAGGTG TTACAACTTC TGTCAATATT TCATTTTAAT TTGTTTTTTT 
    TCA

AT1G21400.1

Model type
Protein coding
Short Description
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Computational Description
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT5G09300.1); Has 9510 Blast hits to 9506 proteins in 1925 species: Archae - 124; Bacteria - 6142; Metazoa - 513; Fungi - 243; Plants - 187; Viruses - 0; Other Eukaryotes - 2301 (source: NCBI BLink).
Link
InterPro Scan - TAIR