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GT13210

CSHL Arabidopsis genetrap mutant lines

Original: GT13210

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13210

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 101653 [Map]; Strand: c
      • AT4G00232.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -932; Region: promoter
      • AT4G00234.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Mechanosensitive ion channel prot...
        Distance: 0; Region: exon2 (CDS)
      • AT4G00236.1 - [+] show detail - pseudogene, similar to leaf senescence-associated receptor-like protein kinas...
        Distance: -488; Region: promoter
    Flanking Genome Sequence: GT13210 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCCGAATGTT GTCGGCTAAG 
    AGTTTTGGTG GGCTTGATAG GGACAAGGTA TTGACTTTAG ACAAAGTATC 
    ATCTGTTGGT CTTTTCGCTA TCGGTTTGAT GGCTTCTGCT GAAGCATGTG 
    GTGTAGCTGT TCAATCTATC TTGACAGTTG GTGAGTAACC TAGAACTCAA 
    CAATGTGAGA TATTAGCTTA TTATGATTTG AGAGAGAATG ACTACTTCTT 
    GTTATATATA GAATTCTTTG TTTTGTGCTT CTATATCTCT CTGCTATATT 
    TGACATTCCT CGCTACAAGT TTAATGCAAG TGTTACAGAT TCTTGAGTTT 
    TCTTGAGCAA CAAGTAACCT TCAACTTCTT CTTAATGAAT TACAGTATGA 
    TATAGGTAGT GAGGAAATAC CACAAGAAAC CTTCATTTTA TCTTCTCTTG 
    AATCAGAACC CGTTTTCATG TACGCTAACT ACGGTAATTT AGCGAAAGCA 
    CTCGACTTTG ATCTTTATCT TCAAAACTCC ATTCCTGTCC AAGTATGGAG 
    TGAAGAAGAG CTGGCTTGGG GACCCTTGTG CTCCAGTAAA ATACCCTTGG 
    AAGGATATTA ACTGCAGCTA TGTCGATAAT GAGTCTCCGA GAATCATTTC 
    TTTGTAAGAT CCTCTTCAAA TGCTCGTATA TGTCTTTGAT CTGTATGTCT 
    TGTTCTCACA AGAGTTTGTT GATCTTCAGA AATTTATCCT CGAGTGGCTT 
    GACTGGAGAG ATTGATGCAG CGTTCTCAAA CCCTTACATG TTACATATTT 
    TTGTTCGTAT TTTTCGATTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 440515 [Map]; Strand: w
      • AT1G02250.1 - [+] show detail - NAC domain containing protein 5
        Distance: -956; Region: promoter
      • AT1G02260.1 - [+] show detail - Divalent ion symporter
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: GT13210 - 5-prime edge 
    CTTTCTCCCT GTTTGAGTGG GATGAATTCT TCCTTTTCCG TTGCTTTTTG 
    AAGAATTGGG AAGAAACAAA ACCAATTACT TTTTATCTGA CTGGTTACAT 
    TTAAGTACAA CACAGAAGAA ATCTTTTTCT TCTCACTATT TTTCTTCTAT 
    AGAAGACTAC CAGTCAGACC CATAGTTGTG ATACTGTTTG TTTTTCAATG 
    ATGCAAATAT GGATATTATA ACTATTATTA AATTACATAA GTGTGGAAAT 
    AAAACCTAGC TATAAACACT GGTTCTTGAA AAAAGAAAGC ATATATGCAG 
    AGTGAGCTAT GATTTACTTG ATAAGGAAGA GACCAATCGC AGTGACGATG 
    AGTGTTGAAG GCAAACCGAA TTTGAAATGT TTAGTGAAAG TGAGAGTGTA 
    TCCATGGCTC ACTGCTCTAC GAGCTTGCTC ACACACTATC AGGTTTGCTG 
    CTGAACCAAG CAACGTCAAG TTTCCAGCCA CTGTGCTCAC CCACGCCAGC 
    AACAACCACG

AT1G02250.1

Model type
Protein coding
Short Description
NAC domain containing protein 5
Computational Description
NAC domain containing protein 5 (NAC005); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: xylem; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 4 (TAIR:AT1G02230.1); Has 2682 Blast hits to 2674 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2682; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02260.1

Model type
Protein coding
Short Description
Divalent ion symporter
Computational Description
Divalent ion symporter; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302; Bacteria - 8135; Metazoa - 259; Fungi - 87; Plants - 203; Viruses - 2; Other Eukaryotes - 801 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00232.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT5G41765.1); Has 109 Blast hits to 109 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00234.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Mechanosensitive ion channel protein (TAIR:AT4G00290.1); Has 57 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00236.1

Model type
Pseudogene
Computational Description
pseudogene, similar to leaf senescence-associated receptor-like protein kinase, blastp match of 56% identity and 4.7e-52 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}
Link
InterPro Scan - TAIR