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GT13225

CSHL Arabidopsis genetrap mutant lines

Original: GT13225

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13225

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13539461 [Map]; Strand: c
      • AT2G31840.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G31850.1 - [+] show detail - unknown protein; Has 18 Blast hits to 18 proteins in 10 species: Archae - 0; ...
        Distance: -738; Region: promoter
    Flanking Genome Sequence: GT13225 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCGAGGAGGA 
    GGCAATCTTC ACCGAACCAA AAGAGTCATA TCTCAACGAA GTAACTTCAA 
    AACGATCTCT TTTGCAATGG GAAAGTAGTG AAGAAGGGCT GAATCCATTA 
    TGCCTGAACA GGGCAAGTGA ACTGTGTCGA AAATGGAAGA ATCATTCCTC 
    CTGAAACAAA ATGAACAAGA TTAAATTAAT CGAAAACCCA ATGAGATTTT 
    TCAAGTTCAA TTCCAAAATT AAATCGCCAA GAAAAAAAAA AAAACTTGAC 
    AAAAAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13539406 [Map]; Strand: c
      • AT2G31840.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT2G31850.1 - [+] show detail - unknown protein; Has 18 Blast hits to 18 proteins in 10 species: Archae - 0; ...
        Distance: -793; Region: promoter
    Flanking Genome Sequence: GT13225 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GCTCCTCGGT TAGTCGCTGA TTACCTAACT 
    CTCTAATTTT GATTCCTTAA GTTGCGAATT GGCTAATTTG AAACCTTTTT 
    TGCTCTGAGG TATTGCTAGA AGTGGAATGT TATGAGGTCG AGGAGAAATG 
    TGAAAGCTTT TGGGTTAGTT GATAAACTTG GGAAGAAGGT ATGGAGAAAG 
    AAAGAAGAAG ATAGTGACAG TGAAGATGAG GAAGATGAAG TGAAAGAAGA 
    GACCTTTGGC GGGAAAGAAG CGAGTCTCGA TGATCCAGTA GAGACGCGGG 
    AATGGAGGAA GACGATAAGA GAGGTGATTG ATAAGCATCC TGATATTGAA 
    GAAGACGAAG AGATTTATAT GGTTGAGAAG ACGACGAAGA TGCAGAAGCT 
    TCTTGCTGAT TACCCACTTG TTGTGAATGA AGAGGATCCT AATTGGCCTG 
    AAGATGCTGA TGGTTGGGGG TTTAGTTTCA ATCAGTTTTT TAATAAGATA 
    ACGATTAAGA ATGAAAAGAA GGAAGAAGAG GATGATGATG AAGATAATGA 
    AGGAGATGAT AGTGAGAAGG AGATTGTTTG GCAAGATGAT AACTA

AT2G31840.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Computational Description
Thioredoxin superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28590.1); Has 792 Blast hits to 656 proteins in 115 species: Archae - 0; Bacteria - 18; Metazoa - 243; Fungi - 77; Plants - 88; Viruses - 24; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G31850.1

Model type
Protein coding
Computational Description
unknown protein; Has 18 Blast hits to 18 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 4; Plants - 3; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR