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GT13252

CSHL Arabidopsis genetrap mutant lines

Original: GT13252

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13252

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11871380 [Map]; Strand: c
      • AT2G27880.1 - [+] show detail - Argonaute family protein
        Distance: -108; Region: promoter
    Flanking Genome Sequence: GT13252 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTCCCAC 
    TCTCACACAA TACACACAAG TAACCAGTTT TCTCTCTCAT TTTCTCAGTT 
    TTTCTCTCTC TACGATTTTG AAAAGATTTT TGTTTCTACT TTGGGAAGCT 
    TTCCGCTACA ATGTCAAATC GTGGTGGTGG TGGTCACGGC GGCGCTAGTC 
    GTGGTCGAGG AGGTGGACGA AGGTCTGACC AGAGACAAGA TCAGTCTTCT 
    GGTCAAGTTG CTTGGCCGGG TTTACAACAA AGCTACGGTG GTCGTGGTGG 
    TTCTGTTTCC GCCGGTAGAG GTCGTGGAAA CGTCGGAAGA GGTGAAAATA 
    CTGGAGATCT GACGGCGAGC GCAAGTTCCG GTTGCTTCTG CTGTTTCTGG 
    CGGGAGAGGT CGTGGTAACA TCGGAGATCC GACGTTTTCT GTTGCGTCTT 
    CGTCTAAGAC GGTGTCTGTT GCTTCTTCAT CTAAAGAGGA AAGTAAGAAT 
    ACGGAGGTTT CTGAGACCAT GTCGAACCTT CAGATTACTT CGACGGAGAC 
    GAAACCTGAA ATGACGTCAC TTCCTCCGGC GTCATCTAAA GCGGTTACGT 
    TTCCGGTACG GCCAGGACGT GGTACTTTGG GGAAGAAAGT CATGGTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11871322 [Map]; Strand: c
      • AT2G27880.1 - [+] show detail - Argonaute family protein
        Distance: -166; Region: promoter
    Flanking Genome Sequence: GT13252 - 5-prime edge 
    CCTACTTTCT CCCTGAGTGG GACGTCTAGG TTTTAAAAGG AATCTAAAAG 
    ATCGTCGGTT TTTTAATTTG ACTATTTTGC CCTCATCTCT TTGCATTCCC 
    GGTTTTTTTA TGACTAAATA AACGAAATTA TCATTGACCA TTTTGCCCTC 
    TTCAGAGTTA AAAGGAAAAT CGAAGAGTTA ATTAAATTAC TATTTTACCG 
    TCGTGGCTTT TTTACCACGT TCCACGTAAT TTCTCCTTCA ACTTCGACGA 
    GGGNTGTTGA TCGTACATTT TCTTAACTTA ACTACAGTCT ATTTTAACTC 
    TACTAGTATT AGTCTGTTCA CTTTTTTATA AATTGATATA TGCTTTTTGC 
    AGAACCAGAA TAGAGATAGA ATAACAGTTT TTACCACTAT TGGCTTATGT 
    TTTCACTTCT GCTTTAATTT ATACTGATTT ACGAATTACG AATATAAAGG 
    ACTATTTATT TTGACAAATA ATAACAAAAG AAGAAGAGAA AAATAAAATG 
    AGTTACGACT ATTTGTATAT AATTTGTTTG TATAATAAAT GTTCAAATAT 
    AAATAAATAA AAACTCCCCA GAATATTATA CTAGTAGTAT GATTAAAGAT 
    AAATATAATT TCAGCTAATT ATGATGATAT TGA

AT2G27880.1

Model type
Protein coding
Short Description
Argonaute family protein
Computational Description
ARGONAUTE 5 (AGO5); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Argonaute/Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT1G48410.1); Has 2539 Blast hits to 2399 proteins in 280 species: Archae - 0; Bacteria - 80; Metazoa - 1295; Fungi - 341; Plants - 581; Viruses - 6; Other Eukaryotes - 236 (source: NCBI BLink).
Link
InterPro Scan - TAIR