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GT13255

CSHL Arabidopsis genetrap mutant lines

Original: GT13255

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13255

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5363056 [Map]; Strand: w
      • AT5G16390.1 - [+] show detail - chloroplastic acetylcoenzyme A carboxylase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G16390.2 - [+] show detail - chloroplastic acetylcoenzyme A carboxylase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT13255 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATA TAGGTTTCAT CGAGAGAGAA 
    CCTAAACCCG ATCTGAACCA ATAACAATAA GAAGACGAAT GGCGTCTTCG 
    TCGTTCTCAG TCACATCTCC AGCTGCTGCT GCTTCCGTCT ATGCAGTCAC 
    TCAAACCTCC TCGCACTTCC CAATCCAAAA CCGCTCTCGC AGAGTTTCTT 
    TCCGTCTCTC TGCTAAGCCC AAGCTTCGCT TTCTCTCCAA GGTACACGAT 
    TCCTTCCTCG ATTAAGATAA GATCATTTAT CCTGCAATGT AGTTTTTAGC 
    TTTTCGAAAT ATGGATAATT TCAATTTACT CAAGTTTTGT TTGGCTAATC 
    TTCGTCGATT AGTTTTTATC TGCATTTTAC GATTTGATTC TCTCTGTATA 
    TATATTTGGC GTCAATTAGA ATTCAGAGAA TACTGTTTTT CCGGAGAAGA 
    ATGATAAAAT CCGATTTCCA GATTTATGGG TACAATCGTG ATTTGGGGTT 
    TTTTCTTTTT AAATATGGTT GAAATCAGTG GAAATGTTTA GGAATTTTCT 
    AGAGTAGTCC AAAGTTGTAA TTCACTACCG TAGTAGTTGA TCTCCAAGGT 
    CGAGATTATG GGATAACTGT TTCTCTGCAT TTGATGACAT TGCAGCCTAG 
    TCGCAGTAGC TACCCTGTGG TGAAAGCACA ATCTAACAAG GTAAGCTCCC 
    TTTTTTAGTG ATCTCTTTTG AGAAAGTGTT TATCCAGAAA C

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5363135 [Map]; Strand: w
      • AT5G16390.1 - [+] show detail - chloroplastic acetylcoenzyme A carboxylase 1
        Distance: -9; Region: promoter
      • AT5G16390.2 - [+] show detail - chloroplastic acetylcoenzyme A carboxylase 1
        Distance: -9; Region: promoter
    Flanking Genome Sequence: GT13255 - 5-prime edge 
    CTTTCTCCCT GCCAAGGAGC ACAACTACAA CAGTTCACTT CAGAAAGAGA 
    GAGAGAAGAT GTCGGATTCG GAACGCGTTT CTCTTTGATT ATAACTCTCT 
    TTCAGATTTC GCCACGTGTC ATACTCTGAT CTGTTGTTCT GTATTCGCGA 
    TTACTCCCAA TCCTTGTGGA CTATCGTATT TTTTACCTTG AAGAATTTAA 
    ATGAATTATT ACTTTTAAAT AAATATAAAA AATGTTAGGG TTAAAATCCT 
    GTTTAGGAAA TTACAATTTC TCTAAACTCT TTAGAGGAAA CACATTTTTT 
    CAGCAAGAAA AAAATCCGAC TGCATCTAAA GATGAAAATG CTGTCGGTGT 
    CTCCAATTTT TATAAAAAAA TACATGAATA GATCCAAATA CATTAGCCTA 
    ATATACATAC GCCAAATGTA TTAAATTTTA AAAATTAGGC GAGACTGGAT 
    TTGGTGAACA ACTAAATGAA GATATGACTT GTTAACAATC TAGCTGGAAG 
    TTGGAACATC CATTGAAAAC AAAGCACAAG CATCGTACAT GTAAGCCAAA 
    ACTATAAACA AAATGCATCT ATTTCAACAA TCGGGTCCCC CAAAATTAAA 
    ATCAATCTTA ATTTTTAAAT TTCTTATAGT TTACATGCAT ATTTACTTGG 
    TTATGAACTT GTGATGCATA CAGATA

AT5G16390.1

Model type
Protein coding
Short Description
chloroplastic acetylcoenzyme A carboxylase 1
Curator Summary
Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.
Computational Description
chloroplastic acetylcoenzyme A carboxylase 1 (CAC1); FUNCTIONS IN: acetyl-CoA carboxylase activity, biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Biotin-binding site (InterPro:IPR001882), Single hybrid motif (InterPro:IPR011053), Acetyl-CoA biotin carboxyl carrier (InterPro:IPR001249), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: biotin carboxyl carrier protein 2 (TAIR:AT5G15530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G16390.2

Model type
Protein coding
Short Description
chloroplastic acetylcoenzyme A carboxylase 1
Curator Summary
Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.
Computational Description
BIOTIN CARBOXYL-CARRIER PROTEIN 1 (BCCP-1); FUNCTIONS IN: acetyl-CoA carboxylase activity, biotin binding; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetyl-CoA biotin carboxyl carrier (InterPro:IPR001249), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: biotin carboxyl carrier protein 2 (TAIR:AT5G15530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR