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GT13257

CSHL Arabidopsis genetrap mutant lines

Original: GT13257

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13257

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17556375 [Map]; Strand: c
      • AT2G42080.1 - [+] show detail - Chaperone DnaJ-domain superfamily protein
        Distance: -871; Region: promoter
      • AT2G42090.1 - [+] show detail - actin 9
        Distance: -369; Region: promoter
    Flanking Genome Sequence: GT13257 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTATGAATCT TGTTGGCGAG 
    ACGAGAGAAG GAAGAAGAAG AAGAACAAGA CACAGAGAGA GAGACACCAC 
    CTTAATTTGA AAGTAAGATT CGTAACGATT GTTCCTCTTT GATCTCTCTC 
    CAAGTTGATT TACCTTTTGC TATTTTTTTT GTTAAAACGG TTTTCGTTAG 
    TAAACTAAAA GTGGATAATG TTTTTAATCA ATAATGGATT TGAAGCCAAA 
    GAAACAAGTT TGTGATACAA ATTGAACCCT TTTCTTCTTC CCCAAGTGTT 
    TGTGATTTGA TTTTGATTCT TACAGTTCTG CTGTTAATGC TGCGTTTGAA 
    CTTTTTTATG ACTTAATTTT TTGTGGAAGC ATTATATATG TTTACTTTAG 
    ATTATTTCGG CATCAGAGGA TATGAAGCCT ATCGTGTGTG ACAAGGGACA 
    TGGAATGGTC CAGGTACGTT AAAAAGAAAC ACACTTTTTT TTTGGTTAAT 
    CGTAAAGGCT TCAATTGTTT TACTAGACAC TATTTATGCG TTTATATTAA 
    AATAAACCAC ATTTTGACCT ATACTCTGGA GTATTTCTCG AAAAATGTTT 
    TGTTAAGGGC CAATTAATTG GTGAAACATT TTGAAGGCGG AATTTGCTGG 
    AAACAATACA CCAAGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18477533 [Map]; Strand: w
      • AT2G44800.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 8982; Region: intergenic
      • AT2G44810.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -1520; Region: intergenic
    Flanking Genome Sequence: GT13257 - 5-prime edge 
    CTTTCTATAT ATGTTATTAA AAAGCACAAG ACTAATATAT AAAGAGCTAC 
    GACATGTGAT GTGAAATTCA AATAGTAAGT AACTCACGTT GCACTTCTTT 
    TATTCGTCGT TTTGCCCGAA CAACACATCA CTCCAACTAA TTTAATTGGA 
    CTTATTCTGT TACCCGCGAT ATAGGCTAGC AAGATAAATT TCATCGCGAC 
    ATTTCATATC TTGATCATTC TGCCTTATTC AATGGATTCA TTCAACCATT 
    CTCTGCTCAT TTGGATATGA TCATTTACAC TTACATTTTA TATTTAGATT 
    CTAAGTCGAT AACTAATTTT AAGATTGTTA TATGTTGCTT TTATACGTAG 
    ACATAAAACT TGTCGTTAAT TGTATAAAAA CAATATGCTA GAAGCCTAGA 
    AGGGCGTGGG AATATAGGAG GTGTATACTT CGTACTTTCC TTGAGCATTC 
    AAATTCAGCA ATTGGCGGCG AATGGCTAAA GCCGAAAGTA CCAAATCCAG 
    CCGATATGAG CCGAGTCGAG CTGGTGATAG TTCCTCACGT GTCAAAGCCT 
    TTCTGAGCCG TATTGTTTGA GAACTCCCAC GTGTCCAGTC CCATCGAAAA 
    CGACGGTCAG ATATTTATTT CGATACACAC TTCTTTCTCT

AT2G42080.1

Model type
Protein coding
Short Description
Chaperone DnaJ-domain superfamily protein
Computational Description
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT3G58020.1); Has 1438 Blast hits to 1435 proteins in 312 species: Archae - 0; Bacteria - 313; Metazoa - 345; Fungi - 73; Plants - 359; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42090.1

Model type
Protein coding
Short Description
actin 9
Curator Summary
actin related gene or pseudogene, based on sequence divergence and lack of expression
Computational Description
actin 9 (ACT9); FUNCTIONS IN: structural constituent of cytoskeleton, ATP binding; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1); Has 13583 Blast hits to 13117 proteins in 2659 species: Archae - 4; Bacteria - 4; Metazoa - 5780; Fungi - 3581; Plants - 1612; Viruses - 2; Other Eukaryotes - 2600 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G44800.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G60290.1); Has 8435 Blast hits to 8385 proteins in 967 species: Archae - 0; Bacteria - 1060; Metazoa - 91; Fungi - 1008; Plants - 4904; Viruses - 0; Other Eukaryotes - 1372 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G44810.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Curator Summary
Mutant has defects in anther dehiscence, pollen maturation, and flower opening. The DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of jasmonic acid biosynthesis.
Computational Description
DEFECTIVE ANTHER DEHISCENCE 1 (DAD1); CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G16820.1); Has 1715 Blast hits to 1709 proteins in 324 species: Archae - 0; Bacteria - 331; Metazoa - 67; Fungi - 376; Plants - 633; Viruses - 9; Other Eukaryotes - 299 (source: NCBI BLink).
Link
InterPro Scan - TAIR