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GT13290

CSHL Arabidopsis genetrap mutant lines

Original: GT13290

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13290

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108191 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT13290 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC AATTCTTAGA 
    GAGCCATGAA TTGTTTGTTT AGATCCAATT AGAAGAAGGT TTAGTTGACT 
    GTGATGATTG TTTGTGTTTT TGGTGGCAGG ACCAGGAGGC GCAGAGAGGG 
    AGGATGCAGG AGATAGATCT TAGTGTTCAC ACTATAAAGT CCCATGGAGG 
    AAGAGTCGCT TCTAAACACA AGCACGATTG GATCATACTC GTCATCTTGA 
    TTGCCATCGA GATAGGCTTG AACCTCATCT CTCCTTTCTA CCGCTACGTG 
    GGAAAAGACA TGATGACTGA CCTCAAGTAC CCTTTCAAGG ACAACACCGT 
    ACCTATCTGG TCTGTCCCTG TGTACGCTGT GCTTCTTCCC ATCATAGTGT 
    TCGTCTGCTT CTACCTGAAG AGGACATGTG TGTACGATCT GCACCACAGC 
    ATCCTCGGGC TGCTCTTCGC CGTCTTGATA ACTGGTGTCA TCACTGACTC 
    CATCAAGGTA GCCACCGGAC GCCCTCGTCC TAACTTCTAC TGGCGCTGCT 
    TCCCCGACGG CAAAGAGCTG TATGATGCGT TGGGAGGTGT GGTATGCCAC 
    GGCAAGGCAG CTGAGGTCAA GGAAGGCCAC AAGAGCTTCC CGAGCGGACA 
    CACTTCCTGG TCCTTTGCGG GGCTTACATT CCTTTCCCTT TAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108263 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: intron1 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT13290 - 5-prime edge 
    TTTCTCTCTT ATACTACTTG AGGGTTAGGG CTTGACATCT CCGGTTTGGA 
    TGATAGTAAC AACGGAATGC AATTCATTCT ATCGGATGAA CAAATTGGTT 
    TAGGCAAACA AAGAACTTTG TCAAAGACAC GACAACACTT TGCTCTACGG 
    ATCCAGACAC TTTTTGTCTG TCTGATTCGT TATGCTAAGC ACACCACTGT 
    TTCATTAACA ATGTTTTCGT TGACTCTATT TAACTACTTT ATTTTCAATG 
    TTAGGATTTT TAAAATGATA AAGAAAAAAG GAGTAGAACA GAGAATAGTC 
    GATTGAGGTT ACCTGAGAAT TGCGCCAGAA TAAGAGAGAA GAGAAAAACG 
    ACCCTATTGT CATCAGAAAG TGAAGATCTC GACTAAGAGA TGAGATGAGG 
    TTAAAAAGAA ATGTGGATCT CGAAACTTAG GAGTAAAACA GAGGAATTGA 
    TCTAACGAAG ACTATAGATA AATAGTCCGA TGAGGAGGAG GTAGAAGACG 
    CGTTGTTAAA CTTGCGAGTT TTGTTTTGTT TCCCAACTTG ACGGTTTGAT 
    AGAAGAATAA GAAGAAAACA GAGAGAGACA TGATTAGAAA CTCCTCTTCC 
    TCTTGAATTT TGACTTTTGA CTTTTCAGTT ATCGCCGG

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR