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GT13306

CSHL Arabidopsis genetrap mutant lines

Original: GT13306

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13306

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13306 - 3-prime edge 
    GGGGGGGGGG GGGAAGAAAA GG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2782404 [Map]; Strand: w
      • AT3G09080.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -619; Region: promoter
      • AT3G09085.1 - [+] show detail - Protein of unknown function (DUF962)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13306 - 3-prime edge 
    GCTCGCCGGA TCATTCCCTG CCACGATTTT TTGCCTATAG GGGGCGAATC 
    CGTACCCAAG CAGAGGCACC AGAGCTTTTT TCCACCAGTT GATGGGAATC 
    GAACATTTCA GAGCAACGAT GCTCGCGATG ATACCTATGA AGTGCAACCT 
    TCGCGTCGAT GGAATCAAGT GTTGCATCAT GGAGAAAGGC CAGAACAAAC 
    ACGGGCTGGG GAAATTCATC TTCTTTATCA AGGGGGAACC CAAAAAAAGT 
    GGGCCTTATT CGATATTGAT CTCAAGCTTT CTT

AT3G09080.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 14743 Blast hits to 9426 proteins in 454 species: Archae - 42; Bacteria - 3876; Metazoa - 4498; Fungi - 2945; Plants - 1499; Viruses - 0; Other Eukaryotes - 1883 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09085.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF962)
Computational Description
Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); Has 704 Blast hits to 704 proteins in 265 species: Archae - 0; Bacteria - 429; Metazoa - 0; Fungi - 2; Plants - 37; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Link
InterPro Scan - TAIR