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GT13316

CSHL Arabidopsis genetrap mutant lines

Original: GT13316

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13316

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5819428 [Map]; Strand: c
      • AT1G17020.1 - [+] show detail - senescence-related gene 1
        Distance: -778; Region: promoter
    Flanking Genome Sequence: GT13316 - 5-prime edge 
    TCCTACTTTC TCCCTGCGTG ATGTGTTGTC ATTCATGATG TTTATAAAAA 
    GAATAAAAAA TAAAGGGCAT ATCGAAATAT ATAACAAAGA GAAAAGAAAA 
    ACAAGAACTG TATGTGTCTA AATAAATAAG GTGTGGTATT ACTACGTAGT 
    TGATATTTTT GTATGTTGAC GAAGACGAAC GAGCTTATTA AGTATTATTC 
    ACAGGCGTTT TTTTCTTTAA CAGATTTGAA CCAAAGACAT AAGAGAGAAG 
    GAAAAACAGA ATATGAACAC GACAGTGACC AGTTGGAGAA AACAGAATTT 
    CTTGGGAAAC AAGATATCAC TTCCCTTCAA TTCTCATAGC ATCAAGATAA 
    GCCTTTCCTT TGAGTTCACG GGAAAACAAG CCATTCAAGT AGTCTTTAGT 
    TTTCAGGCTT CTAAACTTTG CAGCCTCTTG TCTTTGAACA AGGCTTCTCG 
    CCGGACCAAT TTCTTTATCC ATTCCCGTGT TGTGAAATGT CGCAATGGAG 
    AGCCTCTCTT TCTCCAAGTT CACCATTGCC CGGTGCTCGA TGCTTCGGTA 
    TGTCCCGTTC GTTATGATCT GCATTACAAA CGGCCCAACA CCCATCATCA 
    AAATATTTAT GACTAGCGAT T

AT1G17020.1

Model type
Protein coding
Short Description
senescence-related gene 1
Curator Summary
Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
Computational Description
senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
Link
InterPro Scan - TAIR