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GT13318

CSHL Arabidopsis genetrap mutant lines

Original: GT13318

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13318

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 152566 [Map]; Strand: w
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -654; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13318 - 3-prime edge 
    GGAAGCAAGC AGACGGAAGT TCCGAGGAGG ATAAGCCAAG AACGCTGCAT 
    ATAAACACCT AACATATCCA TTTGTCCCGC TCCAAACGCT TGTCCACATA 
    ACGTTTCCAA CGCACTCGCC ATTCCCAGCT GCAGTTTTTT TCTAGAAAGT 
    TAGAGAAAAC GCAAGAAACA GAGGAGGAAA AAAGCAGAGT AGAGGAAGGT 
    TATTTTAATC ACCAAGAAAC CAAAGGAGAA ATTAGAGACG ACGGAGAGAG 
    CGATGGCGAC GGCAGAAAAG CTCAAGATCG CCGAATATGG CCAACGAAGA 
    TGCTTGTGAA GGAGTTAAAC CACCCCGTAA TTACAAAAGA ATGGTTGAAA 
    AGCTATAGGT GCCAGCTTAT TTTCCCCAAA GCTTTAAACG TTTCAACCCA 
    CACAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 254242 [Map]; Strand: c
      • AT4G00590.2 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: 0; Region: exon7 (CDS)
      • AT4G00590.1 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: GT13318 - 5-prime edge 
    AGAAAAGCAT AAAAACTAAG AAAGATAAGG GAAATATACA GTGCCAATGA 
    AGTACAACAC TCTCTAGCTG CAAAACCTCT CATAAGATAC TCTCCCGCTC 
    CAGACACACA ACATCCAACT AGAAATGGAG CTCCAAAATG GTCCTTTAGA 
    GGATGCCCAG CAACCAGAAC CATATGTTGC CGCCAAACCT ACACGGCCGC 
    TAATCTGAAA TACATGATCA GAAAGAGAAG ATCAGTTTT

AT4G00342.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00590.1

Model type
Protein coding
Short Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Computational Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1); Has 3104 Blast hits to 3030 proteins in 885 species: Archae - 117; Bacteria - 1482; Metazoa - 502; Fungi - 255; Plants - 169; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00590.2

Model type
Protein coding
Short Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Computational Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1).
Link
InterPro Scan - TAIR