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GT13327

CSHL Arabidopsis genetrap mutant lines

Original: GT13327

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13327

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4121398 [Map]; Strand: c
      • AT1G12140.1 - [+] show detail - flavin-monooxygenase glucosinolate S-oxygenase 5
        Distance: 0; Region: exon1 (CDS)
      • AT1G12140.2 - [+] show detail - flavin-monooxygenase glucosinolate S-oxygenase 5
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13327 - 3-prime edge 
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACCAG 
    CACGAACCCG AGTCAACTCA CTCAACGTGG CAGTGATCGG AGCCGGAGCC 
    GCCGGACTCG TAGCTGCAAG AGAGCTCCGC CGCGAGAATC ACACCGTCGT 
    CGTTTTCGAA CGTGACTCAA AAGTCGGAGG TCTCTGGGTA TACACACCTA 
    ACAGCGAACC AGACCCGCTT AGCCTCGATC CAAACCGAAC CATCGTCCAT 
    TCAAGCGTCT ATGATTCTCT CCGAACCAAT CTCCCACGAG AGTGCATGGG 
    TTACAGAGAC TTCCCCTTCG TGCCTCGACC TGAAGATGAC GAATCAAGAG 
    ACTCGAGAAG GTACCCTAGT CACAGAGAAG TTCTTGCTTA CCTTGAAGAC 
    TTCGCTAGAG AATTCAAACT TGTGGAGATG GTTCGATTTA AGACCGAAGT 
    AGTTCTTGTC GAGCCTGAAG ATAAGAAATG GAGGGTTCAA TCCAAAAATT 
    CAGATGGGAT CTCCAAAGAT GAGATCTTTG ATGCTGTTGT TGTTTGTAAT 
    GGACATTATA CAGAACCTAG AGTTGCTCAT GTTCCTGGTA CTTCAATTTC 
    AGATGTTTTT TTAGATTGGA TGATTTTGAA GTGAATATGT TTTGATTGAT 
    GA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30344794 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: GT13327 - 5-prime edge 
    TTTCTCCCTG AGATGTAATA GCTTTATATT AAAAAGATCA TATAAAGCAA 
    AGATATTATC TTACCGGAAG TGGTAAGAGA TGAGACTTAA ACCCATCTAT 
    CACGTACTCC TTCAGCTTCT CCTTGCAGTT GCTGGAGAAA TATAAAGTAA 
    TTATCAAAGA AATTATCAAA TATAAAGCAA AGAAATTATC AATACAAAAC 
    TAGGTTAATA TAGAAAAGTT ACCCTAAGCC AGAGTAAGGT TCCCATGTGT 
    CATAACTAGA ATTGTATCCC TTCCACCTTA CCTGAGATGA AATAAAAGAT 
    AAAAATGTTT GAATTATCTC TTAAAAAGGA TGAAATTTGT TTGTAACTAA 
    TTGAGAATTC GGATTTATAG TTCAGGAAAC AATACCATAA GTTGAAGTGT 
    CTTTTCCCCT GTGCCTTGAG GATCTCCAAA CATGATGCCA AGGAACTTTT 
    CTACTTCAAA CTCTCCAGGT TCGAGT

AT1G12140.1

Model type
Protein coding
Short Description
flavin-monooxygenase glucosinolate S-oxygenase 5
Curator Summary
belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates
Computational Description
flavin-monooxygenase glucosinolate S-oxygenase 5 (FMO GS-OX5); FUNCTIONS IN: monooxygenase activity, 8-methylthiopropyl glucosinolate S-oxygenase activity, flavin-containing monooxygenase activity; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 3 (TAIR:AT1G62560.1); Has 12586 Blast hits to 12018 proteins in 1454 species: Archae - 35; Bacteria - 5986; Metazoa - 1231; Fungi - 1610; Plants - 812; Viruses - 0; Other Eukaryotes - 2912 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12140.2

Model type
Protein coding
Short Description
flavin-monooxygenase glucosinolate S-oxygenase 5
Curator Summary
belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates
Computational Description
flavin-monooxygenase glucosinolate S-oxygenase 5 (FMO GS-OX5); CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 3 (TAIR:AT1G62560.1); Has 11380 Blast hits to 10828 proteins in 1431 species: Archae - 28; Bacteria - 5328; Metazoa - 1193; Fungi - 1290; Plants - 802; Viruses - 0; Other Eukaryotes - 2739 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR