1. Home
  2. Mutant Lines
  3. GT13329

GT13329

CSHL Arabidopsis genetrap mutant lines

Original: GT13329

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13329

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8534304 [Map]; Strand: w
      • AT3G23700.1 - [+] show detail - Nucleic acid-binding proteins superfamily
        Distance: -516; Region: promoter
      • AT3G23710.1 - [+] show detail - Tic22-like family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13329 - 3-prime edge
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TACAGACAGG 
    TGCCTTACCA GAATTGAATC GAGAGATTCT AGAATCTAAA GCTTGCTTAG
    CTTGATCACG AAACGAATTG AGAGCAGAGA ATATATTAGG TTTGTTGTTG
    TTCGTGTTGG CGTTGAAGAG AGGATTAAGG GTTTGTGAAA CGTTGAGGAG
    TAAATTGGAG CATTGAGATT GGAGATTTGA GAAGGATTGT TGTATATTAT
    TAAGCTCGTT TTGTTGTTTC GATGGTGGGA AAATGTTTGA ATTCATAGTT
    TTCTCGGGAA AATGATGCTT GAGACTCTGA GAAAGAGTAG TGAAGGGTTT
    TTGAAAGGCT TTGCGAAGAA GACGACGACA CTGAGGAAAA AGATTTGATC
    TCTTTGCTTG AATTAGAATT GTTTTTGTAA AGAAACCCTC TAATTATCCA
    ATGTTTACAA ATTGATCCTA TATGTTTTAA AATATAGCAC CTGTGAGCTG
    ACAAATGCCA CGTCA
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8534367 [Map]; Strand: w
      • AT3G23700.1 - [+] show detail - Nucleic acid-binding proteins superfamily
        Distance: -579; Region: promoter
      • AT3G23710.1 - [+] show detail - Tic22-like family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13329 - 5-prime edge
    CTTTCTCCCT GCCTGTCTGG GCGAGATTTC TGACGACGGT GGTGGTGCGA 
    GGGCTCAGGT GACGGTTCCG ATTCGCGGAA GCGGGAAAGG ATTATCTGCT
    GATGCTATTG AGGAGAGATT GGCGGGAGTT CCTGTTTACG CGTTGAGTAA
    TTCGAATGAG GAGTTTGTGT TGGTTTCAGG GACTTCCTCT GGGAAATCTC
    TGGGTTTGTT GTTTTGTAAA GAGGAAGATG CAGAGACTCT TCTTAAAGAG
    ATGAAGAGTA TGGATCCTCG TATGAGGAAA GAAGGTTCAA AAGTTGTTGC
    TCTTGCTCTT AGCAAGGTAT AAGGAGGAAT CAATAACTCA ATTAGCTCCT
    TTAGTATTCT TCTGTTTAGT GGTTTTGATT TTTGTGTGTG TTGTTTGTTG
    CAGGTGTTCC AGTTAAAAGT TAATGGTGTG GCATTTAGGT TGATTCCTGA
    GTCTACTCAA GTGAAAAATG CCTTGAAGGT GAGTTGATTT TACGATCGAA
    CATATCTTTG GATACTCAAA AACTTTTCTT TTGTCACGGT AGGCGTTAGA
    CCTGCTGAAT ATGACTGTCA TCATTCATTA ACGAGGAGCT TTTGTGTTAA
    TTTAGTTCAG GGGCATTTTG ATTACTTCAG TGGTTTATTG TAGCTCTGTT
    TTCAGCGACT ATAGATAAGT CAGTTAGTTA

AT3G23700.1

Model type
Protein coding
Short Description
Nucleic acid-binding proteins superfamily
Computational Description
Nucleic acid-binding proteins superfamily; FUNCTIONS IN: RNA binding; INVOLVED IN: response to cold; LOCATED IN: chloroplast stroma, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: ribosomal protein S1 (TAIR:AT5G30510.1); Has 30347 Blast hits to 20342 proteins in 2814 species: Archae - 227; Bacteria - 22388; Metazoa - 193; Fungi - 227; Plants - 347; Viruses - 0; Other Eukaryotes - 6965 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23710.1

Model type
Protein coding
Short Description
Tic22-like family protein
Computational Description
Tic22-like family protein; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tic22-like (InterPro:IPR007378); BEST Arabidopsis thaliana protein match is: Tic22-like family protein (TAIR:AT4G33350.1); Has 104 Blast hits to 104 proteins in 42 species: Archae - 0; Bacteria - 39; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR