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GT13331

CSHL Arabidopsis genetrap mutant lines

Original: GT13331

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13331

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7619463 [Map]; Strand: c
      • AT5G22800.1 - [+] show detail - Alanyl-tRNA synthetase, class IIc
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT13331 - 3-prime edge 
    TCCTCAGAAC ACTGGCTGTA CTGATACTGA AATCCACAAA GTAAAGATAT 
    TTTCAGTCCC TCAAATTCAA TGCTGATGAA TAATGTCAGG AGATACCAAA 
    ATGCATAATA ATAAAAAAAA ACAGAACCTG ATGAGCTCTT AGCAATAATC 
    TGAGGAGACT GAGTTGATCT GGGAAGTAAG ATAGAAGGAG AAACACCTGC 
    AGAGGTTCTG GTAACAAAAC CTACAAAACC CATTATCAAG AAAAACAATC 
    ATAAAACCAA ATTATAAAGA ATAACAGACC AAGATAATGA CAATTT

AT5G22800.1

Model type
Protein coding
Short Description
Alanyl-tRNA synthetase, class IIc
Curator Summary
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description
EMBRYO DEFECTIVE 1030 (EMB1030); FUNCTIONS IN: alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: alanyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc (InterPro:IPR002318), Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain (InterPro:IPR018162), Alanyl-tRNA synthetase, class IIc, core domain (InterPro:IPR018165), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Phosphoesterase, DHHA1 (InterPro:IPR003156); BEST Arabidopsis thaliana protein match is: Alanyl-tRNA synthetase (TAIR:AT1G50200.1); Has 15847 Blast hits to 15731 proteins in 3137 species: Archae - 486; Bacteria - 7745; Metazoa - 750; Fungi - 242; Plants - 138; Viruses - 0; Other Eukaryotes - 6486 (source: NCBI BLink).
Link
InterPro Scan - TAIR