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GT13334

CSHL Arabidopsis genetrap mutant lines

Original: GT13334

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13334

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9437148 [Map]; Strand: c
      • AT1G27170.2 - [+] show detail - transmembrane receptors;ATP binding
        Distance: 0; Region: exon4 (CDS)
      • AT1G27170.1 - [+] show detail - transmembrane receptors;ATP binding
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT13334 - 3-prime edge 
    TTTTCCGACC GTTACCGACC GTTTTCATCC CTATTATTTT ACATTGCTTC 
    AGCTGGACCT CAGAAACTGT TCAAATCTTT CTGAATTTCT TGTGGATGTT 
    TCTGGACTGA AGCGTCTTGA AAAACTTGTT CTTTCTGGCT GTTCATCTCT 
    CTCGACGATA CCAAAAAACA TTGGTGCTAT GCAATGTTTG AAAAAGCTTC 
    TTCTTGATGG AACTGCGATA AAGAACGTAC CAGGAGATAT TTATCGCCTC 
    CAAAATCTTG AAAAACTTAG TCTAAGAGGT TGCAGATCTA TTCAAGAGCT 
    ACCTTCGTGC GTAGGAACAT TGACATCACT GGAGAAGCTA TATCTTGATA 
    ATACTGCATT GCAAAATCTT CCGAGTTCTA TCAAAAAGCT TAAAAATCTC 
    CAGAAGCTGC ATTTGAGGCT CTGCAGATCC CTTTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9437027 [Map]; Strand: c
      • AT1G27170.2 - [+] show detail - transmembrane receptors;ATP binding
        Distance: 0; Region: exon4 (CDS)
      • AT1G27170.1 - [+] show detail - transmembrane receptors;ATP binding
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT13334 - 5-prime edge 
    AGTTTGCATC GGTCGAGAAC AAGCTTCTCT AGGGCATTAT GGTTTGATAA 
    ATCAGGAATA GTTTCTAAGC TGTGGCAACC ACGAAAATTT ATAACCTTCA 
    AGTTCTCATC AACCTGAAAA GCAGAAATAG CTATTTTTAG CACACGGAGA 
    CTTTATGACT CAAAACTATT TACTTACCCA GTATAGGGCA AATAAGAAAG 
    TCTTACCTCG TCGTTGCGCA AACTCTGGAC TCGTCTTATT CTACTCTCTG 
    AAAGATCAAG AACAGCAAGT TGCCCAGCAA GAAAATCCAG AGGGAGATTT 
    TCTAACGGGC AACCTTTCCA CTGTATCCAC TTGAGTTCAG ATGGGAGAAG 
    TTTAAGAT

AT1G27170.1

Model type
Protein coding
Short Description
transmembrane receptors;ATP binding
Computational Description
transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27170.2

Model type
Protein coding
Short Description
transmembrane receptors;ATP binding
Computational Description
transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 88149 Blast hits to 36022 proteins in 1268 species: Archae - 44; Bacteria - 5525; Metazoa - 17765; Fungi - 1406; Plants - 58458; Viruses - 8; Other Eukaryotes - 4943 (source: NCBI BLink).
Link
InterPro Scan - TAIR