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GT13339

CSHL Arabidopsis genetrap mutant lines

Original: GT13339

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13339

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16381557 [Map]; Strand: w
      • AT2G39230.1 - [+] show detail - LATERAL ORGAN JUNCTION
        Distance: -90; Region: promoter
    Flanking Genome Sequence: GT13339 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTTATC TAAAGTCTAA AACCCTTCTC 
    TAAACGGCGT CATTTAGTTC AGCCTTAAAC CCTGTAGTCT AAAAAGTCTC 
    GGCACCAAAA CTGCGTCGTT TTCGTTTACT TTTCTTTCGC TACTTGATGT 
    CGATGCATTC TCAATTTCTC ATGTGTACAC TGTAACAGTA CAGTTAACAA 
    AATAAATTTG TTACTATTAT TAAATGTGTT TTTGTAACAG TATAATAGCA 
    TAAATGACTG ATACATTGAC ACAACAGTAT AAATTCAACT CCCACTAAAG 
    AAGATGATAA ATCAAAGACC AAATCATGGA AAAAGCCAAG CAAAACATAA 
    AAAGGTGAAA AAAATAGTAT TTCATTCATA CTTTAGATTG GATATTACAT 
    GAGGACGGTG AAGATAAATC GGTCAATGGC CAAAAGCTTT ATGGATAATA 
    GTGGTATACA TGTCTTATTA CTGTGTTGGC GTTTTATGTG CCATCTTTTT 
    TATTTTCTTA TATATCTCCA CTA

AT2G39230.1

Model type
Protein coding
Short Description
LATERAL ORGAN JUNCTION
Curator Summary
Encodes a pentatricopeptide protein (LOJ) that is specifically expressed in lateral organ junctions.
Computational Description
LATERAL ORGAN JUNCTION (LOJ); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G54980.1); Has 63662 Blast hits to 14403 proteins in 306 species: Archae - 7; Bacteria - 57; Metazoa - 980; Fungi - 1296; Plants - 59204; Viruses - 0; Other Eukaryotes - 2118 (source: NCBI BLink).
Link
InterPro Scan - TAIR