1. Home
  2. Mutant Lines
  3. GT13358

GT13358

CSHL Arabidopsis genetrap mutant lines

Original: GT13358

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13358

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30038858 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon5 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT13358 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTCAAGGC 
    GGAACTAGAG AAGCTGCGAG AGGAAAACAA AGCCATGAGG GAGTCTTTTT 
    CCAAGGCTAA TTCCTCCTGC CCCAACTGCG GAGGAGGCCC CGATGATCTC 
    CACCTCGAAA ACTCCAAACT GAAAGCCGAG CTCGATAAGC TTCGTGCAGC 
    TCTTGGACGC ACTCCCTATC CCCTGCAGGC TTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30038770 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: intron4 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT13358 - 5-prime edge 
    GTTCTCGTGC CGTTCTTGAA TAGCCTGTCC ATGCATGATT GATTCATAAA 
    CTATATATAT ACTACTATAG TCAGACAAAA ATCCATATCA CGTAAGATAT 
    ACATTACCTT GATCTGTGTG CGGCGGTTTT GGAACCAGAA CTTGACCTGG 
    CGAGGGGCCA GCCCTAGTTG CTTGCTCAGC TGCTGTCTTT GCTTCTCGTC 
    CGGATGTGGT GTCTCTTTGA ATAGCCTGCA ACGTCCTCAA ATTCAGACAT 
    TTCTAAAAGA TGAAAATCTT TACATGCAAC TGAACCCTAA CTAGGCATAT 
    GTATACTATT ACTGATCAGC TTTAATTGTG ATGAAACAAA TTAACACTTT 
    ATTGTTTAAG CCTTTATATA CGTTATAACG CGCGTGTACC TACAGTCATG 
    TTAGGAGAAG ACGGGGAATA ATAACGAGTA AGCGTCCGAA ACCATATAAG 
    CGCATTGAAA CTAATGCTGG ATCATATATC ATCGATCGGC AATATATTTG 
    TATGAA

AT1G79840.1

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR