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GT13365

CSHL Arabidopsis genetrap mutant lines

Original: GT13365

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13365

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10354 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13365 - 3-prime edge
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGAC 
    GTGGCAATTA TTTCCCGATT CCAGCGGCGA TGGTTTCCGG TGGGAAGTCG
    CTGGCCGGAT TCTTCAGTCC GTCTCGGATT CTACGCCAAC CAAGGCGCTC
    GAATCGACAG CTCCTCTACC TTCTATGGCC GATCTCTTGC TCCAAGGTGA
    TTCTTCGTTT CTTCCTTTTT TTGTCGAATC GTGTTTGTCA TGTGACTCAA
    AGGAGATTGA ATTATTATTT GATGCTTCAA GGATGCTCGA AGCTTATAGC
    ACGGGAAGAA GCGATGCCTG GGGAAATCCC AATGTTCAGG ACTGGGCTAG
    GGAAGTCTGT AGTTCTTAAA GAGTCTTCGA TTGCTAAAGC CAAATCCATT
    TTAGCAGAGA AGGTTACTTA CTCAGGTACT TTATGTGACA GTATTGAATT
    CCCTTGACTA GTCATTTGTT TCTGAATTCC CTTGAATTGT TACTTAATGT
    TGGTGAAAAT GGTTTCCTGA AAATCTTTTG AATGTTCCAT GTTCTTGGCT
    ACACTTTAGA TTTGCGGAAC ACAAATTGCT CAATTCCCCA AATGAGACAA
    GTGGATACAG CTGAAACTTT GCCAATGTTC AGGACGGCCT CGGGGAAATC
    TGTCCCTTTG AAAGAGTCTT CAATTGCCAA AGCTATGTCT ATTCTAGGAA
    GTGATAAGAT TATTGACTC

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR