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GT13387

CSHL Arabidopsis genetrap mutant lines

Original: GT13387

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13387

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 85152 [Map]; Strand: w
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -249; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -264; Region: promoter
    Flanking Genome Sequence: GT13387 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGTCA CAATCATCTC 
    CTGGCCCCCT CTAGATCTCT CTCTCTTTTC CTCCTTAGAT TAAAATTTCT 
    CCAGGTTTCT TGGCGTTACT GTGTGAAAAA TTCTTCTTCT TCTTCATNCT 
    CACTCGACCA CCNCACCACT CGCAACTTGG GTTCGCCTAC AAAGCAGCGT 
    TGTCCTTACG CTGTAACTTT CTGCAATTCG TGGAGGGAAG CTGGACTCCG 
    ATACTCCGTC ACGCAACGCC GGAGCAAAGG CTTTGGGCCG GTGTCAGCTC 
    TCAATGACGA CGATTCACCA ACAGAGACCA CCCCCGGCGT TGGCTCTGCT 
    GTAGAAGACA GACCACCAGG TATTTATTAT TAGGAGAAAC TCCACTTTCT 
    TGATTGATTT TTATTATCAT CTCCACACTG CTTTGGGTTG TTGATATAGT 
    TAGTTAGTTA GTTAGTGATG AATTACACAC TGCTGCTGTG GCAGATTCAT 
    CTGAAGATAG ATCAAGTTCG GTCTATGAGT TTCTGTATCC CCGTAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 85215 [Map]; Strand: w
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -186; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -201; Region: promoter
    Flanking Genome Sequence: GT13387 - 5-prime edge 
    TCCATCCTAC TTTCATCCCT GGTTCCGGTC GAGTTTCGTT GCCCACATTT 
    GATATTTTCC AAAACAACCC AATCCTTTTT TTTTTCCCCG TAAAACCTCC 
    TCCCACCCAA AATTGGTAAA CAAAAGGAAA ACAACGCCTT TTTAGGGAAA 
    AAGAAAGGGG GTTTAATGGG GCCTTTTTTG GTTTAAAAGG GCCCTTAACA 
    CGGGCCAAAA GGGAAGGTTA AACCAAGAGG GGAGGAGGGG GGTCCCTTCC 
    AAAGTCCACA CAAGGGGTTC GTTGGGTTGG CAAGTTTCCC CGCCGGCCCA 
    AGGGGAAAAA AACCCCGGGG GAAAAATCCC TAAAATGGGA TCGGGGGGAA 
    ATTTGGGAAC CCAGGTAAGG TCTCCAAACC TTTTCCG

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR