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GT13388

CSHL Arabidopsis genetrap mutant lines

Original: GT13388

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13388

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 179567 [Map]; Strand: w
      • AT2G01410.1 - [+] show detail - NHL domain-containing protein
        Distance: -3160; Region: intergenic
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 538; Region: intergenic
    Flanking Genome Sequence: GT13388 - 5-prime edge 
    ACCATTTTTT CTATAAAGGG TGGTCTTTAG ATTCATGTGC GGAAGTTCAC 
    AGAATTTGAA GTTAACATAA ACTTTTTGAG ATTTTTTTCT GCTAGAGATC 
    GTGTATTCTT AAAATAACGG GACCGTAAAC ATGCATCGTA TGATCATAGG 
    ATTAATTAAT TAGAGATTAG GATTTTGCTT CTGTCGTAAA ACAGTGTTTG 
    TTATCAAGGA ATATGCTTCA ATTAACTGTA ATAAAATAAA ATTACTGTCT 
    TTTGGAACTT TTGCTTCTGA CTGTTCAGAC CTGATTTCTA TCATTGACAA 
    TCAAGACGAT TGACCGACAT TCGCAGCAGA ATTGGCATCC TATCGCTCCT 
    TAGTTTGTTT TTTCCTTTCT TTCCGTATTA GATTTCTTTC TCGTAATTTT 
    AACACTCGAA CTGATTGTTT AGCTAAAAAA GCTCGGGCTA GAAATAATAT 
    TTTCTCCTAT GTAAACATAA TGGGTTCATG AATGGCTTCT CTCTAGCGGA 
    AAATCTCTTC CCGACGAAAT TTAATATTAA TGGTGTTTTG TGGAAAAAAA 
    A

AT2G01410.1

Model type
Protein coding
Short Description
NHL domain-containing protein
Computational Description
NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT2G16760.1); Has 137 Blast hits to 137 proteins in 39 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01420.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31; Bacteria - 1046; Metazoa - 12; Fungi - 10; Plants - 485; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR