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GT13389

CSHL Arabidopsis genetrap mutant lines

Original: GT13389

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13389

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14057155 [Map]; Strand: w
      • AT4G28420.2 - [+] show detail - Tyrosine transaminase family protein
        Distance: 0; Region: intron4 (CDS)
      • AT4G28420.1 - [+] show detail - Tyrosine transaminase family protein
        Distance: 0; Region: exon4 (3UTR)
      • AT4G28430.1 - [+] show detail - Reticulon family protein
        Distance: -637; Region: promoter
    Flanking Genome Sequence: GT13389 - 5-prime edge 
    CCAACATCTC TTATACTCTT CCGTGATTCT AGATCAATTT AGATGATTCT 
    TATTTCTTAA CAAACAACAA TTAAACTGCA GACGAAGCTG AAGCTTCCAT 
    TGTTGGAGGA CATAGAAGAC GACATGGATT TCTGTATGAA GCTAGCCAAA 
    GAAGAAAACC TCGTCTTACT ACCAGGAGTG GCTTTGGGAT TGAAGAACTG 
    GATAAGGATA CCAATTGGAG TAGAAGCTCA GATGCTGGAA GATGCACTTG 
    AGAGGCTCAT TGGG

AT4G28420.1

Model type
Protein coding
Short Description
Tyrosine transaminase family protein
Computational Description
Tyrosine transaminase family protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity; INVOLVED IN: cellular amino acid and derivative metabolic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT2G20610.1); Has 41170 Blast hits to 41169 proteins in 3031 species: Archae - 1037; Bacteria - 30017; Metazoa - 726; Fungi - 773; Plants - 1311; Viruses - 0; Other Eukaryotes - 7306 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28420.2

Model type
Protein coding
Short Description
Tyrosine transaminase family protein
Computational Description
Tyrosine transaminase family protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: cellular amino acid and derivative metabolic process, biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT2G20610.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28430.1

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G20590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR