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Mutant Lines
GT13390

GT13390

CSHL Arabidopsis genetrap mutant lines

Original: GT13390

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13390

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 2572631 [Map]; Strand: c
  - AT4G05020.1 - [+] show detail - NAD(P)H dehydrogenase B2
    Distance: 0; Region: exon1 (5UTR)
  - AT4G05020.2 - [+] show detail - NAD(P)H dehydrogenase B2
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: GT13390 - 3-prime edge
```
TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTCACAT CATCTCCTGG 
CCCTCTCTAG ATCTCTCTCT CTTTTCCTCC TTAGATTAAA ATTTCTCCAG 
GTTTCTTGGC GTTACTGTGT GAAAAATTCT TCTTCTTCTT C
```

5 prime edge [+] show sequence

Chromosome: 2; Position: 17964616 [Map]; Strand: w
- AT2G43220.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)

CTTTCTCCCT GCCTCCAGGG CCACCTAGTT ACTCTGACGA GAAGTGCAGC 
CTCTGTCAAC GGAAACTCTC CAACTTCGTT TACCATTGTA AGTTATGCAA 
TTTCAGCATA GATATGGAAT GCGGAAACAG GCCCCCGCCC CACAAAGTGG 
ATCATCCAAA GTGCCACGAG CATGCACTCA CCCTCATGGG AAGGGAAGTA 
TCCTTCACTT GCAATGCTTG TGGTACGCAT GGTGAACGGA ACCCTTATGT 
ATGCCTACCA TGCTCTGTCA TGTTTCATTA TGATTGTATT GATCTACCAC 
ACGTCATCAA CATCAATCGT CATGATCATC GCATTTCACA TTCATATCCA 
TTCGACAAGT GGGAATTGGG TATGTGAAAT CTGTCGTCAA GATATCAACA 
CCACGTACGG AGGCTATTCA TGCAACAAAT GTCCAGATTT TTTTGTTCAT 
TCAAAATGTG CAACTAGAAA AGACGTGTGG GATGGGACCG AACTCGAAGG 
GATACCTGAG GAAGTAGTAG ACGTTGCGCC ATTTGAAGTG ATCGAGGAAG 
GGGTAATTTA TCATTTCTCC CACGAGAAAC ATAACTTATT CCTTATTGAG 
GATGTTTTTA TAGATGGTGC TGAAGACATG CATTGTGAAG CTTGCGCCCG 
TCCAGTCTCT TCTGAGAAGC ACTACAAGTG CGTGGAATGC AAGTTTATTC 
TTCACGAAGA GTGTGCGAAT CTTCCTCTTA

AT2G43220.1

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G45730.1); Has 1495 Blast hits to 745 proteins in 41 species: Archae - 0; Bacteria - 3; Metazoa - 111; Fungi - 0; Plants - 1367; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G05020.1

Model type: Protein coding
Short Description: NAD(P)H dehydrogenase B2
Computational Description: NAD(P)H dehydrogenase B2 (NDB2); FUNCTIONS IN: disulfide oxidoreductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, extrinsic to mitochondrial inner membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: NAD(P)H dehydrogenase B3 (TAIR:AT4G21490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G05020.2

Model type: Protein coding
Short Description: NAD(P)H dehydrogenase B2
Computational Description: NAD(P)H dehydrogenase B2 (NDB2); FUNCTIONS IN: disulfide oxidoreductase activity, oxidoreductase activity, FAD binding, calcium ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, extrinsic to mitochondrial inner membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: NAD(P)H dehydrogenase B3 (TAIR:AT4G21490.1).
Link: InterPro Scan - TAIR