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GT13397

CSHL Arabidopsis genetrap mutant lines

Original: GT13397

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13397

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3337112 [Map]; Strand: c
      • AT3G10670.1 - [+] show detail - non-intrinsic ABC protein 7
        Distance: 0; Region: exon1 (CDS)
      • AT3G10680.1 - [+] show detail - HSP20-like chaperones superfamily protein
        Distance: -661; Region: promoter
    Flanking Genome Sequence: GT13397 - 5-prime edge 
    TTCTATTATG CAATCTCCGA GCTAATTCCG CCGCCGCTCC AATCCTGCGA 
    ACTACTCGCC GTTCAGTTAT TGTTTCGGCG TCTTCCGTAT CCTCAGCCGT 
    CGATTCGGAT TCGTTGGTGG AAGATCGTGA TGACGTGGGG AGGATCCCGT 
    TGCTTGAAGT TAGGGATTTG AGAGCAGTGA TTGCTGAATC GAGACAAGAG 
    ATACTGAAAG GCGTCAATTT GGTTGTCTAC GAAGGAGAGG TGCGTATTAA 
    TCAATGCAAT TTTATGGTTA AGACTTGAAA TTTAATTTGC AGAAAGCTTT 
    GCCTGGTAGT GCTGTCTCAT TATATGATAA AGTTTTGAGT TTGATATCAT 
    AACTTGTGAA TTCTATTTGT GTGGATTTGT TTTGCATTGC TGCCGATTGT 
    AATCCATGGC TTCTTTTGTG GTTGCTAATA GGTTCACGCA GTGATGGGGA 
    AGAACGGTTC AGGAAAGAGC ACGTTTTCGA AGGTGAACAT TTTATTTGTA 
    TATCTTGTAT CTCAGGATTA ACATTGATGC TGCAGA

AT3G10670.1

Model type
Protein coding
Short Description
non-intrinsic ABC protein 7
Curator Summary
Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged Fe
Computational Description
non-intrinsic ABC protein 7 (NAP7); FUNCTIONS IN: protein binding, ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: iron-sulfur cluster assembly, thylakoid membrane organization, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase SufC, SUF system FeS cluster assembly (InterPro:IPR010230), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT4G33460.1); Has 256475 Blast hits to 243565 proteins in 3618 species: Archae - 5159; Bacteria - 209774; Metazoa - 3736; Fungi - 3348; Plants - 2780; Viruses - 4; Other Eukaryotes - 31674 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10680.1

Model type
Protein coding
Short Description
HSP20-like chaperones superfamily protein
Computational Description
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G04890.1); Has 10151 Blast hits to 7022 proteins in 776 species: Archae - 41; Bacteria - 1142; Metazoa - 3661; Fungi - 700; Plants - 785; Viruses - 49; Other Eukaryotes - 3773 (source: NCBI BLink).
Link
InterPro Scan - TAIR