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Mutant Lines
GT13399

GT13399

CSHL Arabidopsis genetrap mutant lines

Original: GT13399

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13399

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 182837 [Map]; Strand: w
- AT4G00420.1 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron2 (5UTR)
- AT4G00420.2 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron2 (5UTR)
- AT4G00420.3 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron2 (5UTR)

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATGTG GTTTTGATGG 
GTAACGTTTT TACTAATAAT AGCACTATGC TTCTGGATTT TGATCTAGGT 
GATCATTAAC TAGTCTATAT ATATGCAATG TCTTTGAAAC ACTTTTTGTT 
GTAGTTAAAG TCTGTCTGAT TTGTGTTGGT TTCTTATTAT AAAGGAATAA 
GGTAGCTGAA GCTAATTAAT CCAATAAAGA AAAAAAAGAA TTTTCTGCTT 
GAAATCAACG ATGGATCTTC CTCCTCCTCC AGAGTCTTCA TCAAATCCCA 
TATCTTCCTT CTCTGTGGTA AGAAATGCGG AATATAATTA GAAATATTAG 
TCTTTCCTTT TGGGCTTAGA TCTTCTTAAA TGAGAAGAAA TAATCATTTT 
GTCATGTCTT TTTGTTAATT TTTGTTGGAT TGGATCAGTT ATTATTATTA 
TTTTTTCTTT GTCTCTATTC AGGCTCAAAA GAGGATGTTG CTACAGAGAT 
GCGAAAGTAA GTTTAAGATA AGGAAGCTGA ACGATACTGT CGAAGAAGAC 
AATGTCACGC AGATGGAGCC AAACTTTACA CTTGAGAACA CTCTTGTTTC 
CGAACCAGAA GCAGATTTGA GGCCTCACAC AACTGAGCCC ACTACTGAAG 
GTACTTACTC TTTTTCTCCC CACACTGTTT ACTTAATTTT GGTGTTATCA 
GTTGTATATA GC

5 prime edge [+] show sequence

Chromosome: 4; Position: 182909 [Map]; Strand: w
- AT4G00420.1 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron2 (5UTR)
- AT4G00420.2 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron2 (5UTR)
- AT4G00420.3 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron2 (5UTR)

CTTTCTCCCT GACACATATG ACCCATGACA TAATCTATAC ATACAAAGAA 
TTCAATAATA ACAACAACTT TCAGGACCAC GACGCATAAT CACTCTTAAT 
TCAATAATAT TGTCTCAGTT GCCTGAACAT TTGCTAAGAA ACTTATAATT 
TGACAAAGCT AGGAGATTGT CGCAGAGACT TTTTCTGAAA TCAAATTTGA 
CCGAACTTTT AACACAAGAG ATTTGTTCTG TTTTCTATAG AGCTAAAGAA 
TCAGTATGAA GTTTACCAAG TAAAGCTTTA AACTTAACTA AATAATCTGC 
TTTCCCTTTG GTCAAAACTC ATACTAGTTC CAGCTTAACC ATCTTAAATA 
AACATGTTTA AGCAGGCTAT ATAAATGCAC AGTTACAGAA AGAACAGTGG 
CTATTGCAAT GAAGTAACCA AAAAGGAAAA TAAAAAGGAG AGACAGTTAT 
CTAGGAGCTC ACAGTTATGG CAAGAAGCTG AGCTTTTGGA TTCCTGCTAC 
CAATCCGTTT TTTAAATGCC TTTCACAACA TCTTTTGCTT GCCTGCAAAA 
CAGCAACCGC TTTCAGACAC CACATAGGAT CGTCCAATTA GTATAAACAC 
TGAAATATCC TTCTTCCAAT CACAAAGCAT AAATATTTCC CAGCTTCTAC 
AATAAAGCCC TATGAAAGAT GACTAACTTG AGCAAAACAG TAGGCCACAA 
GTATTCGAAT TGGTCCTAGA AAACATGGAA ATATCTAACT ATGGTAAAGA 
AACGAAATTT GATTATCTTA ACTATCTTAA CTATCTTAAC TATCATATAT 
CTTTCC

AT4G00420.1

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00420.2

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 72 Blast hits to 72 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00420.3

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR